Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g01470 | ATGGTTAGCAAAACCAGAGAACGATCAAAACTGGAAAACTACCCGTTTTCTTGGAAAACCACTTGCGGCCATCATTACAAAAACAAAACCCACCGTCCTTTCCTTCCACAATTTTCCTTTCTCTTCTTCCATCTTCTCTCTCAATTTTCTCACACATTCTTCTTCTTCTTCTTCATCGTATCACAATCCAATTCATTCACTATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCAGTTCTGAAAGGGGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCCTCTGGTTCCGCACTTAAAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCTGCGGTGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTCAAATTCGGAGACCCGACCCGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTGGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACGGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACAGTCGGATGCTGACGTGA | 945 | 53.33 | MVSKTRERSKLENYPFSWKTTCGHHYKNKTHRPFLPQFSFLFFHLLSQFSHTFFFFFFIVSQSNSFTMRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAVAVKSKPKEEPVVVVSEFKFGDPTRIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQGGDVELELTLGFGHSRMLT | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28260719 | 28261895 | + | ClCG06G014820.2 | Cla06g01470 | 275662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g01470 | 314 | ProSiteProfiles | LOB domain profile. | 70 | 176 | IPR004883 | - | |
Cla06g01470 | 314 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 68 | 308 | - | - | |
Cla06g01470 | 314 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 68 | 308 | - | - | |
Cla06g01470 | 314 | Pfam | Lateral organ boundaries (LOB) domain | 71 | 169 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02100 | Cla-Chr5:32588847 | Cla06g01470 | Cla-Chr6:28260719 | 6.28E-46 | dispersed | |
Cla06g01470 | Cla-Chr6:28260719 | Cla03g00230 | Cla-Chr3:2765872 | 2.57E-08 | dispersed | |
Cla01g01703 | Cla-Chr1:31981682 | Cla06g01470 | Cla-Chr6:28260719 | 2.73E-50 | transposed | |
Cla05g01250 | Cla-Chr5:14582922 | Cla06g01470 | Cla-Chr6:28260719 | 1.72E-93 | transposed | |
Cla05g02297 | Cla-Chr5:34577729 | Cla06g01470 | Cla-Chr6:28260719 | 1.24E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61311 | PF03195 | LOB | 1.10E-21 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g01470 | - | - | csv:101219232 | 499.204 |