Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01470 ATGGTTAGCAAAACCAGAGAACGATCAAAACTGGAAAACTACCCGTTTTCTTGGAAAACCACTTGCGGCCATCATTACAAAAACAAAACCCACCGTCCTTTCCTTCCACAATTTTCCTTTCTCTTCTTCCATCTTCTCTCTCAATTTTCTCACACATTCTTCTTCTTCTTCTTCATCGTATCACAATCCAATTCATTCACTATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCAGTTCTGAAAGGGGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCCTCTGGTTCCGCACTTAAAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCTGCGGTGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTCAAATTCGGAGACCCGACCCGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTGGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACGGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACAGTCGGATGCTGACGTGA 945 53.33 MVSKTRERSKLENYPFSWKTTCGHHYKNKTHRPFLPQFSFLFFHLLSQFSHTFFFFFFIVSQSNSFTMRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAVAVKSKPKEEPVVVVSEFKFGDPTRIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQGGDVELELTLGFGHSRMLT 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28260719 28261895 + ClCG06G014820.2 Cla06g01470 275662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01470 314 ProSiteProfiles LOB domain profile. 70 176 IPR004883 -
Cla06g01470 314 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 68 308 - -
Cla06g01470 314 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 68 308 - -
Cla06g01470 314 Pfam Lateral organ boundaries (LOB) domain 71 169 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02100 Cla-Chr5:32588847 Cla06g01470 Cla-Chr6:28260719 6.28E-46 dispersed
Cla06g01470 Cla-Chr6:28260719 Cla03g00230 Cla-Chr3:2765872 2.57E-08 dispersed
Cla01g01703 Cla-Chr1:31981682 Cla06g01470 Cla-Chr6:28260719 2.73E-50 transposed
Cla05g01250 Cla-Chr5:14582922 Cla06g01470 Cla-Chr6:28260719 1.72E-93 transposed
Cla05g02297 Cla-Chr5:34577729 Cla06g01470 Cla-Chr6:28260719 1.24E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61311 PF03195 LOB 1.10E-21 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01470 - - csv:101219232 499.204