Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01472 ATGATCGAAATAAGCCTCCACGAAACCATGGACATTCGCGCCAAAACAGAGAAGAATAAGCCCAAACCTTCGACAAACTCCGCTCACAACCATCACCGGAAGAAGCGGCGGAGATTAGCAGTCAGTTCAGAAACCACAATCTCAACATCTAGCGAGCCTCAAAAGCTTGCCGCATCGAATAGGTTAAACCCAATTCGTTCTCCTTCTCGAGCTTCACGAAAACACGAGAAGAGGAGCTCGAGTCAGACGGATGGTCATCGTCGATGGGTGTACTCTGCTCGTGATTGCTCAAAATTTATAGATAAGATTATGGTTGCTTCATATAACATACTAGGAGTGGAAAATGCATCGAAGCATCCAGATTTGTATCATAGATTGCCCTCCAAATTCTTGGATTGGAGTTTCCGGAAAGAGCTTATAGGCAATGCAATTAAATTTTACAATGCAGGCATCTTATGCTTGCAGGTGCTAAGAATGATTTTAACTCATGCAAGTGGAACTATATATCTGCAGGAGGTTGACCGTTTCAATGATTTAAATGAACTCTTCCATAATTATGGCTACAAAGGTGTTTACAAGGCTAGAACTGGTGAAGCAAGTGATGGATGTGCTGTATTTTGGATCAACAAACTATTTTCCCTTTTGCATCAAGAAGCTATAGAGTTCCAGAGTTTTGGGCTACGTAACAATGTTGCTCAACTATGTGTTTTGAAGATGAATAAATCAAAATCAAAGTCCAAAACAAGGTACATTCTGCATTTCTGTAAACTTGTTGCTATCTTTCGAAGCTTTGTGATTGGGAATATACACGTTCTTTTCAACCCAAATCGTGGAGACATTAAGCTTGGGCAGGTCAGACTGTTTCTTGAAAAAGCTCATAGCCTCGCACAAAGATGGGGAAATATACCTGTTATTATTGCGGGCGACATGAATAGCATACCAAAGCTGGATATACAACTGCATGATCGCAGAAAGATTTCAGGGCAGCTTGATTTTTCATCATCACATGGGGCCTTCAGATTTTGTAGTGAGGGTACAAAGTGGTCCAATGTTTCGGTCTTAAGGTCCTTCAGATGGAGTGATGAGGAAATAAGGAATGCATCTGGTAGCGAGAATGTTACCCATCTTCAGCACCATTTAAAGCTTTACAGTGCGTACTCTGGGGTTCCTGGTAATTGTAAAACAAGAGATACTAATGGAGAACCTTTAGTAACTTCATTCCACTCCAAGTTTATGGGAACTGTTGATTATATATGGCACTCAGAAAAACTTGCCCCTGTTAGAGTTCTGGAAACATTGCCTGTTGATGCATTAAAGAGGACTGGAGGACTTCCAAATGAGGTAACCGCAAGAGTACTGTGGGAAAAAGCAGGAGCTGGCGTTGCCTGTTTAGCTGGTACCGAGTCATTTCCAACTTTATGGTGA 1425 41.61 MIEISLHETMDIRAKTEKNKPKPSTNSAHNHHRKKRRRLAVSSETTISTSSEPQKLAASNRLNPIRSPSRASRKHEKRSSSQTDGHRRWVYSARDCSKFIDKIMVASYNILGVENASKHPDLYHRLPSKFLDWSFRKELIGNAIKFYNAGILCLQVLRMILTHASGTIYLQEVDRFNDLNELFHNYGYKGVYKARTGEASDGCAVFWINKLFSLLHQEAIEFQSFGLRNNVAQLCVLKMNKSKSKSKTRYILHFCKLVAIFRSFVIGNIHVLFNPNRGDIKLGQVRLFLEKAHSLAQRWGNIPVIIAGDMNSIPKLDIQLHDRRKISGQLDFSSSHGAFRFCSEGTKWSNVSVLRSFRWSDEEIRNASGSENVTHLQHHLKLYSAYSGVPGNCKTRDTNGEPLVTSFHSKFMGTVDYIWHSEKLAPVRVLETLPVDALKRTGGLPNEVTARVLWEKAGAGVACLAGTESFPTLW 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28273839 28281258 + ClCG06G014860.2 Cla06g01472 275664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01472 474 MobiDBLite consensus disorder prediction 1 24 - -
Cla06g01472 474 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 49 447 - -
Cla06g01472 474 PANTHER PROTEIN ANGEL 49 447 - -
Cla06g01472 474 SUPERFAMILY DNase I-like 102 427 IPR036691 -
Cla06g01472 474 MobiDBLite consensus disorder prediction 25 39 - -
Cla06g01472 474 Gene3D Endonuclease/exonuclease/phosphatase 76 450 IPR036691 -
Cla06g01472 474 MobiDBLite consensus disorder prediction 1 85 - -
Cla06g01472 474 Pfam Endonuclease/Exonuclease/phosphatase family 106 441 IPR005135 GO:0003824
Cla06g01472 474 MobiDBLite consensus disorder prediction 42 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01472 - - - bhj:120088620 715.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01472 Cla-Chr6:28273839 Cla10g01690 Cla-Chr10:32668482 7.75E-14 dispersed
Cla06g01472 Cla-Chr6:28273839 Cla06g01480 Cla-Chr6:28354118 9.27E-87 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g332 . . . Bda15g00518 . . . . . . Cma10g00237 . Car10g00224 . . . . . . . . . . . Cla06g01472 Cam06g1625 Cec06g1688 Cco06g1681 Clacu06g1590 Cmu06g1541 Cre06g2353 . . . Cone19ag0278 . . . . . . . . . . . Bma08g00064 . Cmo10g00252 . . . . . . . . . . . . . . . . . . . . . Lsi06g01335 . Chy02g02367 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01472 Cla_Chr06 FPKM 0.52381 0.329615 0.008509 0.141697 0.144031 0.137807 0.014495 1.024071 1.046592 0.341271