Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01479 ATGTATGGTGGTGATGAGGTATCCGCTATAGTTATTGATCTGGGTTCTCACACTTGCAAAGCTGGTTATGCCGGAGAAGATGCTCCCAAGGCTGTTTTCCCCTCTGTAAGAATTCCTGCATTTGACATTGACCATGTGAGATATGGTGTGCACAGCACCTATATTTCTGCGTGCACTTCAATATCTGATCAGTTTAATATGATGCCTGTGGTAGCCAAGAGGCCTGCTATTGCCGATGTAATGATGAAAGACGTTGTTGGATGTACCGATGAAATGGATGTTGATGACCCTACAAGTGCTGAAAAGAACTCTGGATCTGCTGGAGAACCTAAAAGTAATGCTAAAACTCTTGATTCTGATAAAGGCAAGGGAAAACGCAAACTGTACGTTGGTTCTCAAGCTTTAGGGTTTCGCCGTGATAATATGGAAGTACTCTCGCCTATAAAGGACGGAGTTGTTGTTGACTGGGATATGGTTGATAGCATATGGGACCATGCTTTCAGAGAATGTCTACTTATTGATCCTCAAGAACATCCCATGCTACTTGCGGAACCATCTTCTAATTCACAACAACAGAGAGAAAGGACGGCTGAGATTATGTTCGAGAAGTACAAAGTTCCTGCGTTGTTTTTGGCAAAAAATGCTGTTCTCACGTCATTTGCATCAGGTCGTGCTACATCACTTGTTGTTGACAGTGGTGGTGGATCAACAACTGTTGCCCCGGTACATGATGGTTATGTTCTACAAAAGATAATGCCAAGATACTCCTTCAAGAGAAAGGAAATACGACCAGGAGAGTTTCAGATAGTGGAACTTGATTTCCCAAATACGACTGAAAGTTACAAACTGTACTCACAGAGGGTAATTGCTAGTGATATAAAAGAATGCGTATGCCGAGCACCAGATACTCCTTATGATGAAAGTGCGTATTCAAATATCCCAATGACTCCATATGAACTTCCTGATGGCCAACTATACCTGGGATGGAGAGTTTCACTGAGACAGCTCGCTCAGTTCAGGGATTGCCGCATATGTTTTCTTGGTTTTATGCACACGTCTACACTTGTAATCGAGAGTATAAATAAATGTGATGTGGATATTCGCAGAGAACTGTTTAGCAGCATACTGCTTGCTGGTGGAACAGCATCAATGCAACAGCTCAAAGAACGTCTTGAGAAAGATTTGTTAGAGGAGTCTCCTCAAGCTGCTAGGGTTAAAGTATTGGCGAGTGGAAATGCAACTGAAAGAAGATTCAGTTTTTACAATCGGTATCTTGGTGCCACAGGTGAAGGCAAGTTATTGATTTCTTGTGAATGTCTGGATAGGAGGGAGTATATTGGCCTCTCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAATCCGAGTACGAAGAACATGGAGCTTCTTATATTCAAAGAAAATGCCCCTAGATGGTTTCATTTATGCTTGCAGTTGTCAGAGGCTCGATTTGGATGTAGGCTTCGTCCCCGAGACAACAGGTCGTTAA 1506 42.56 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVRIPAFDIDHVRYGVHSTYISACTSISDQFNMMPVVAKRPAIADVMMKDVVGCTDEMDVDDPTSAEKNSGSAGEPKSNAKTLDSDKGKGKRKLYVGSQALGFRRDNMEVLSPIKDGVVVDWDMVDSIWDHAFRECLLIDPQEHPMLLAEPSSNSQQQRERTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKIMPRYSFKRKEIRPGEFQIVELDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQLYLGWRVSLRQLAQFRDCRICFLGFMHTSTLVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSFYNRYLGATGEGKLLISCECLDRREYIGLSWFISANVVLQIRVRRTWSFLYSKKMPLDGFIYACSCQRLDLDVGFVPETTGR 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28340784 28351304 + ClCG06G014940.1 Cla06g01479 275671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01479 501 SUPERFAMILY Actin-like ATPase domain 224 419 IPR043129 -
Cla06g01479 501 Gene3D - 1 232 - -
Cla06g01479 501 Pfam Actin 4 420 IPR004000 -
Cla06g01479 501 PANTHER ACTIN 2 37 IPR004000 -
Cla06g01479 501 PANTHER - 2 37 - -
Cla06g01479 501 CDD NBD_sugar-kinase_HSP70_actin 146 247 - -
Cla06g01479 501 MobiDBLite consensus disorder prediction 99 113 - -
Cla06g01479 501 Gene3D Actin; Chain A, domain 4 259 345 - -
Cla06g01479 501 MobiDBLite consensus disorder prediction 91 125 - -
Cla06g01479 501 Gene3D - 233 395 - -
Cla06g01479 501 PANTHER ACTIN 83 250 IPR004000 -
Cla06g01479 501 PANTHER - 251 427 - -
Cla06g01479 501 SUPERFAMILY Actin-like ATPase domain 5 230 IPR043129 -
Cla06g01479 501 SMART actin_3 7 457 IPR004000 -
Cla06g01479 501 PANTHER ACTIN 251 427 IPR004000 -
Cla06g01479 501 PANTHER - 83 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01479 K11340 ACTL6A, INO80K; actin-like protein 6A - csv:101218049 608.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01479 Cla-Chr6:28340784 Cla07g00303 Cla-Chr7:3424689 1.99E-45 dispersed
Cla06g01479 Cla-Chr6:28340784 Cla02g00072 Cla-Chr2:718261 1.67E-45 transposed
Cla06g01479 Cla-Chr6:28340784 Cla02g01971 Cla-Chr2:34771151 4.08E-45 transposed
Cla06g01479 Cla-Chr6:28340784 Cla04g00809 Cla-Chr4:23142506 3.60E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01479 Cla_Chr06 FPKM 27.237783 27.981916 25.164648 26.021355 33.217247 31.241905 32.428017 29.724701 30.649395 31.248571