Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01480 ATGGCCACTACCTTCCTCAGCTGCGGCTCGTTCTTGCGCCACCACTCTCATTTCTGCAAATCCTTTTTTTGCTGCTCCAACGATGTTGATGCTTCATCTACGTCGTCGTTACCGAAATCAACTAGTAGCTCTTACGCCCGTCGATGGTATAACCCCTCCATCCGAAGACAATCGAACGAAGGTGTCGAAATTGTGCGCCACTGGATTGAGGCGGATCAACCTTCCGCCTCTGAAGAAAAATTTAGTGTGGTATCATACAACATACTGGCGGAAAGGAATGCATGGAAACACAGAGGTTTATATCCCAACGTTCCTTCACCATACCTGAAATGGAACCACCGTAAGAGAGTTATATGCGAGGAACTTCTTATGTGGAACCCTGATATAATCTGCTTGCAGGAAGTGGACAAGTATTTTGATGTTTCAGAAATCATGGAGAAAACAGGTTACGTTGGGTCATACACGAGACGCACTGGAGATGCTATTGATGGATGTGCTATATTCTGGAAAGCTGACAAGTTTCGACTGATAGATGAAGAGAGCATCAAATTCAACATGTTCAATCTTCGCGACAATGTTGCTCAACTTACTGTGCTAGAGATGTCCAAAGGTAAATCAAGATTACTGATTGGTAACATCCATGTGCTTTACAATCCAAGCAGGGGGGACGTCAAATTAGGTCAAATTCGTTATCTGCTATCAAGGGCAGAGATTCTTTCTGAGAAATGGAGCAATCTTCCTTTTGTTCTTGCTGGTGATTTCAATAGTACTCCTGAGAGTGCAATATACAAGTTTTTATCATCATCCGAGCTAAATTTCATGTCCTATGACCGAAGAGAATTATCTGGGCAATCGGAATGTCATCCTGCTAAAGTTCTGGGTGTAAAAAAGGAAGCGTGCAGACCTTTTTTCTGCTTGGGAAGTCAAACAAAAGGTTTCTGGACTGAAGAAGAGGTGAAAGTTGCTACTGGCAGTGCTGACTGCCAAGTGGTGAGGAATCCCTTTAGGCTTACCAGCTCCTATGCTACACTCAAAGGTCCTACTACAACACGAGGATCCACCGGTGAACCATTGGCTACTTCCTACCACTCTAAGTTTCTTGGAACTGTGGATTATATTTGGTACTCTGATGGTCTTACTCCTACGAGGGTTGTTGATACTGTTCCCATTGATATTCTTCTGAAAACAGGCGGCCTTCCATGCGAGTTCAATTTGAGAAGGAAAGGGAGTTGTGAATTTGAGAAAATGATCGGCGGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTGGGCGGCGTTCTTGGCTTCTACGTAATGCACCGCGTTGAACTTGGCTATAAGGTAAATGACTTAACAAGCCATGATCATGTATGTGATGGGCTTCATCTTGCTTCATGGAAGGATAATGCATATCTCTGGATGAAGGAACAGCGGTTCGCCCTACCCGCCGGCGCCACCGCTACCGCCACTCTCTTTCTTTTATTTGTTCTCTTGTTTGGCTGCCATTATTGTGAACTCTTCTTGGAAGATCCTCCCTCCAAGGAGTTTATTGATGAATTTCTCAAGATTAAGATTTTCTTGGAGGATTCCAGCATACGTAGTGATGATGAGGTAAATGAAGAAGATATGGATGTTGTAGACACCGGTGATGAAGAGATTGCCAATGCACTAGCTGTTGCACAAACACTTGGAAAATCTCCTGAGACCACAAAGTCAAAAACCAAATATGACGATCTCGCTGAAGGTTTGAAGGAACTCAGCATGGACCGTTATGATGATGAAGATGATGAAGCAAGAAACCCTTCCCATTCAGGTTACAAGTGGCTAGTTACAACAGATGTGGAGAGCTTGGCATGGGATCCACGTACAGAGCACATGTTTGTGGTGAGCCTAGAGGATGGTACAGTTAAAGGTTTTTACATCTGGAATGCCACCACAGAGACTAGTTCTGAATCAAAAGCAAGTTTTACTCTCCATGCGCATCAGAAAGTTGTGTGCTCTGTTTCTTACAATCCCTTGGCACCTAATGTACTTGTTTTTTTCTTCTGTTTCTTGCTCAACTTCTCCCCTCCTCTCCTCTCCCGTATGTTGCCAGCTTTGGCCGATTTCTAG 2124 44.21 MATTFLSCGSFLRHHSHFCKSFFCCSNDVDASSTSSLPKSTSSSYARRWYNPSIRRQSNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKYFDVSEIMEKTGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFNMFNLRDNVAQLTVLEMSKGKSRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSEKWSNLPFVLAGDFNSTPESAIYKFLSSSELNFMSYDRRELSGQSECHPAKVLGVKKEACRPFFCLGSQTKGFWTEEEVKVATGSADCQVVRNPFRLTSSYATLKGPTTTRGSTGEPLATSYHSKFLGTVDYIWYSDGLTPTRVVDTVPIDILLKTGGLPCEFNLRRKGSCEFEKMIGGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKVNDLTSHDHVCDGLHLASWKDNAYLWMKEQRFALPAGATATATLFLLFVLLFGCHYCELFLEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVVDTGDEEIANALAVAQTLGKSPETTKSKTKYDDLAEGLKELSMDRYDDEDDEARNPSHSGYKWLVTTDVESLAWDPRTEHMFVVSLEDGTVKGFYIWNATTETSSESKASFTLHAHQKVVCSVSYNPLAPNVLVFFFCFLLNFSPPLLSRMLPALADF 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28354118 28369547 + ClCG06G014950.2 Cla06g01480 275672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01480 707 Gene3D Endonuclease/exonuclease/phosphatase 57 407 IPR036691 -
Cla06g01480 707 Pfam Endonuclease/Exonuclease/phosphatase family 85 386 IPR005135 GO:0003824
Cla06g01480 707 SUPERFAMILY DNase I-like 80 392 IPR036691 -
Cla06g01480 707 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 22 401 - -
Cla06g01480 707 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 22 401 - -
Cla06g01480 707 Gene3D - 606 684 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01480 - - - csv:101217812 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00411 Cla-Chr4:15409263 Cla06g01480 Cla-Chr6:28354118 1.72E-32 dispersed
Cla05g01755 Cla-Chr5:29382491 Cla06g01480 Cla-Chr6:28354118 7.71E-15 dispersed
Cla06g01480 Cla-Chr6:28354118 Cla11g01579 Cla-Chr11:29490035 1.96E-24 dispersed
Cla06g01472 Cla-Chr6:28273839 Cla06g01480 Cla-Chr6:28354118 9.27E-87 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g352 . . . Bda15g00522 Bpe12g00687 . . . . . Cma10g00244 . Car10g00230 . . . . . . . . . . . Cla06g01480 Cam06g1635 Cec06g1697 Cco06g1692 Clacu06g1601 Cmu06g1550 Cre06g2362 . . . . . . . . . . . . . . . Bma08g00068 . Cmo10g00261 . . . . . . Cpe18g00749 . . . . . . . . . . . . . . Lsi06g01343 Csa01g00369 Chy02g02376 Cme02g01758
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011598 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 0 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01480 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0