Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01483 ATGAGCCGGTCCCCTTCATTTTCTGTGAAGTCAGAAGTTAATGTGAAGTTGGATCCAGAATCTCTGCATAAATGGGTTGTGGCCTTTTGCATTATTAGGTTTGATCTTGAACAGGGTCAACTGATTGAGGAGTGCTACCCTCCAGACTGTCTTACTCAAGATGAGGAACTTGAAGTTGCATTTAGCTCGTTTCCCGATTCAATTTCGCAGCACCAGAACCGGTCAAGCATTCATGATTGTATATTTTTTTTCCGGCTTCGAAGAAAGGAGATTTCTCAACCAAGAAATGTTTCTTCTTCTGAGATAACTGAAGTGGATGAGTTATCACAGAATTCCAATGACTCAAAACTTCCAAGATCAAAAAGCAGCCTTGGTACCAAGTCCAAGTACATGTATGGTTTTGTTTTTAATAGGCAGAGACACGATGAGAGGCTAAGAAGAGGTGGAGAGCAGAAGTCTGTGGTAATTTTGTCTCATAGTCCTTATTCTACTGTCTTTAAACCTCTGTTGCAAATCATGGGTCCATTATATTTTGACATTGGGAGGAGGGCTCTTGAGCATATTGCTGCTTATGTTTCAATGTGGCCTGCTCCTTTACCCGGTAAACAAATGGAGCTTCCTATTGGAAATGCCTTGCTTAAAGCACACTTGCCACCTGTTCATAGTCTGCCAATGGATGGTGAGACGTTTTCCGAAGAGTCCACATCCTCTATGGCTCCTTTTCTTCCCAATAATCAGTCGGTTCCACAGGGTCTTTTCCATGATTCTGATCTCTTTGGTACATTCCGGGGTCTTCTTTTGCAGCTCTGGCTGTTGTGGGAGTTGCAACTTATTGGTGAACCCATCCTTGTCATTGCACCAACGCCTCCCCAGTGTTGTGAAGCTGTCGCTGGTCTTGTTAGCTTGGTTGCTCCTCTTCTTTGTAGTGTTGATTTTAGACCTTATTTCACCATTCATGACCCTGAGTTTTCACACTTAAACGCACTTCAAGATGGAGCTACTTTCCCACCAATGGTTTTGGGGGTGACGAACCTCTTCTTCCTTAAAGCCCTTCGTAATATTCCTCATATTGTATCAGTTGGAAACCCTGCTGTTAATCGGCTTGCCCAGACATCCAGGTCCTCTTCTGGCAGTGTTTCTGGCGCACCTGAAGGGTTTGGATTTCGGCAGCTATCCTTGAAAAAATTCTCTCCGTCAAACTTGCTCAATGCTGTCAAGTTGAGGAGAGATGGTCCACTATGCCTCATGACAGAACATAAGGAAGCCATCTGGAGCACTTACCCTGCAGCAATGAAGCCGGACACATCGATCTTGAATCGGCTTATTGATGCTGGCTTATCACCAAGGGTTGAGGAGTCCATGTCTGTTGTTAACAATGAGATACTGCGTCGGCACTTCCTGGAACTTACCACCAATTTTTTGGCTCCTTTTGGGCCGTACTTCCGGACCACCACCCCTTCAGAAGGATGTTCTCCATTTGATGAGCCGTCTCGCCCCCAATTTAGTGCCGATGAATTTCTCGCCAATCTATCAACAAGAGGTCCAGGAAAATTTCTGGCAAAGCGAATGAGATCTAACTGGCTGGATTTGTACAGGTTGTGTGGGTGTTACATTCACATTCACATTCCCTTCCATTGTATTCTTCTATTCCATAAGAAGCGGTTTCTCAAAGGACCAAACTTTATGCCTTGGTTTCAGAGAAGGCGTGCTGTTGCAGAACAAGAACAGCATAGACTATGGAGGCAAGCAAGAATGAATGCTGATGTACCACGGCTTATGTCTAAAATGCCTGAATTGGAAGTTGTTGATTTATTTAATGCTATTGAAAGACATCTTCTAAGAGAAATGGAGCTGCAGGAATCCAGGAGGGCTTATGCAGACTCTGTGGCTACTTGTCAGAAACTTAAAGGGGATCTGCTGACTGTTTTCAACGTGCTTCCTAAAGACATGCAACAGCTTTTGCTTCTTAATCCACAAAGGGCATCTCTTCTCCGTGGAAGTCCCGAATCAACGAAACTTCCAGGGCGTCTGCTTGTACAAGTTGGTGTTGTATCGCCAAGATAA 2064 44.38 MSRSPSFSVKSEVNVKLDPESLHKWVVAFCIIRFDLEQGQLIEECYPPDCLTQDEELEVAFSSFPDSISQHQNRSSIHDCIFFFRLRRKEISQPRNVSSSEITEVDELSQNSNDSKLPRSKSSLGTKSKYMYGFVFNRQRHDERLRRGGEQKSVVILSHSPYSTVFKPLLQIMGPLYFDIGRRALEHIAAYVSMWPAPLPGKQMELPIGNALLKAHLPPVHSLPMDGETFSEESTSSMAPFLPNNQSVPQGLFHDSDLFGTFRGLLLQLWLLWELQLIGEPILVIAPTPPQCCEAVAGLVSLVAPLLCSVDFRPYFTIHDPEFSHLNALQDGATFPPMVLGVTNLFFLKALRNIPHIVSVGNPAVNRLAQTSRSSSGSVSGAPEGFGFRQLSLKKFSPSNLLNAVKLRRDGPLCLMTEHKEAIWSTYPAAMKPDTSILNRLIDAGLSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGCSPFDEPSRPQFSADEFLANLSTRGPGKFLAKRMRSNWLDLYRLCGCYIHIHIPFHCILLFHKKRFLKGPNFMPWFQRRRAVAEQEQHRLWRQARMNADVPRLMSKMPELEVVDLFNAIERHLLREMELQESRRAYADSVATCQKLKGDLLTVFNVLPKDMQQLLLLNPQRASLLRGSPESTKLPGRLLVQVGVVSPR 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28378619 28386020 - ClCG06G015000.2 Cla06g01483 275675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01483 687 MobiDBLite consensus disorder prediction 99 124 - -
Cla06g01483 687 ProSiteProfiles Tripartite DENN domain profile. 27 553 IPR037516 -
Cla06g01483 687 PANTHER UNCHARACTERIZED 1 660 IPR024224 GO:0005085
Cla06g01483 687 PANTHER LD41638P 1 660 - -
Cla06g01483 687 Pfam Stabilization of polarity axis 261 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01483 - - - csv:101216067 1273.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g361 . . Bda06g00489 Bda15g00657 . . . Bma12g00939 . . Cma10g00247 Cma11g00259 Car10g00234 Car11g00237 . . Cpe04g01415 . . . . . . . Cla06g01483 Cam06g1638 . Cco06g1696 Clacu06g1604 Cmu06g1553 . . . Cone13ag0298 Cone19ag0267 . . . . . Blo15g00367 . . Bpe07g00729 . . . . Cmo10g00267 Cmo11g00265 . . . . . Cpe18g00745 . . . . . . . . . . . . . . . Csa01g00365 . Cme02g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006560 1 1 1 2 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01483 Cla_Chr06 FPKM 3.328408 3.535752 3.62393 3.080866 8.326362 8.456064 8.608769 2.793292 2.505369 2.4938
Cla06g01483 Cla_Chr00 FPKM 3.091271 2.993083 3.407719 2.979994 7.1685 6.409445 7.256817 2.710944 2.539127 2.634476