Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01484 ATGGTGGTTGAGAAACGCGGGAGGGCGTGTGTGTTGAAGAGGGGTGGAGGGCTTTTTGAGGTGAAGGAAGTTGTGCGTGGAGGAGGAATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATATTTTTTCCCCTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCGCATAATCGTCATTGGGCACCGTGTCATGCTGTTGTTGCCACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTATATACCTCGAAAGCCTATCTGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTGTTTTAATTGATAATTTCAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGCGATGAGGCAATATGGGAGACACTGCCTCACTTTTGGATTGCTATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATAAATTTTGGCATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAACATTCAGACAAGAGAACGTTGTTCATCATCAGCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTCCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTGCGGGTGCTAAAAGTATGCCACTTCCCGTCCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGATTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGTGGATCTGGCACAGCATTGTATTTCAGTTTTTCAGTTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGTATGAACTTACTTGATATGGTGAAGACAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTCGGTACAATACTTTTAGTGGATATCCTCCTGAGATTGTGAAGAAGATGCCCAAGAAAGATCTAGCAGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGGCTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGCGTACTATGCAGTTCCTGCTGTGAGAAGTGTAAAAAGTGCCCAATATGTCGCGTGGTTATCGAAGAAAGGTTACCAGTATATGATGTATAG 1515 44.29 MVVEKRGRACVLKRGGGLFEVKEVVRGGGMTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIVLIDNFRSLMPGDDESMSDEAIWETLPHFWIAISMVFFVAATVFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSAVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPAGAKSMPLPVLFSPLFILQGAAVIYAASRLLEKAVLLLRGGSGTALYFSFSVRAHACLEFFHHGSSMNLLDMVKTGYWGGGQLMKAVERSRHDCTMRVPLGRYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCCEKCKKCPICRVVIEERLPVYDV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28387349 28395123 - ClCG06G015010.2 Cla06g01484 275676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01484 504 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 30 504 - -
Cla06g01484 504 Pfam Zinc finger, C3HC4 type (RING finger) 454 497 - -
Cla06g01484 504 ProSiteProfiles Zinc finger RING-type profile. 457 492 IPR001841 -
Cla06g01484 504 SUPERFAMILY RING/U-box 448 499 - -
Cla06g01484 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 502 IPR013083 -
Cla06g01484 504 SMART ring_2 457 491 IPR001841 -
Cla06g01484 504 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 30 504 - -
Cla06g01484 504 Pfam Transmembrane Fragile-X-F protein 57 318 IPR019396 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01484 Cla-Chr6:28387349 Cla10g00176 Cla-Chr10:1873114 1.19E-09 dispersed
Cla06g01484 Cla-Chr6:28387349 Cla02g00491 Cla-Chr2:4841435 4.40E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01484 - - csv:101215825 848.195