Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01493 ATGGATGCTCGCCGAGGTTCTCGCGTCGTCAACCCCAAAGTTCGTCAGGTCGGATTCTTCACTCTCGACGCTCCTAATCCTCCCGGCCGCTCCCTCTCCGGTCCCGCCGACTGTGCCCCTTCTCAACAATCCCTCTCTCCTCCCACCAATTCCTTGTCTCCTGTCATGATTCCCCCTCCCCGTCATCTCTCCGATAACCTCGCCTCTCGCTCTGCTGTTTTTCCTGTTCCAGCTCCCGCCAATTGGAGGGATTCCGCCGATCATATTCATGTTGGCAGCTATAACCCCTCCGAAACACTGCTTGCTACGTCGCCTTCCACTAGAATTGGGGACGAAGAGCTGGACATGTCCGAGGATTCTTCCGCCTCCGTTCCATATCGCCGGAGTGGTTCCGGGAAGATTGCTTCGAGCTTTCCCGGCGTTGGAATCCACATGGCGGCTAAGTCGTCGGAGATTTCGCAGGCGCTGTTGGAACCTAATAAGGCTTTTGGAGTTGCAGAAAAGAATGGAGGGGCTTCCACAGAGGTACAAAATCGACAGTCACCATCAAATTCAAAACCCCTGAAGGCAAAAATGACAAAGGCTGAAAGACGAGCACTACAGGAGGCACAACGAGCTGCAAAAGGTGAAGCAAAGAAGCCAGGTGATGCCCCTGGTAAAGCTGTGAAGCAGCCCTCTGCAATGAGAGATAGCACTGCCACACCTTCGGTGGTATCTACTGACAAAAGAGGAGGTGATAGAACACATGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAACAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCAAAGTTTTTCCAACTTGACCCTATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATTTACATGGAGGCAATGCTCGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTTTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCTCTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCTCATTGCCAAACTACCATTGAATCTTCCAGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATTATAATTGCAGATGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCTTCATGTGCTGTAGAGATGCTTCTATTATATGCTCATGAGCTCGGAAAAGAATTTCGTATTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTTCGTAGGCTCATAGGGAGGGGGCTAAGTTGTACATACACTCATATAAATGCTATTTCTTACGTGATGCAGAAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAACGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCTAACGCATTCCATGTTCCAGTCTTAATCTGTTGTGAAGCCTATAAATTCCATGAAAGGGTACAACTTGATTCAATATGTTTCAATGAATTAGGTGATCCGGACACTATCTCAAAGGTTCCAGGAAGGAAGGATATTAATCTAGATAATTTGACTGCTAAAGAACAACTGCAACATCTAAATTTAATGTATGATGCCACGCCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGTGTGCCAGTGATCGTGCGGGAGTATCGGAGAGAGCACCTGTGGATATAAGAAGGTTGAAAATGACCCTTCATCTGGAAGGAAGCTTATTGCTTCTAGCATGA 1962 45.72 MDARRGSRVVNPKVRQVGFFTLDAPNPPGRSLSGPADCAPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVFPVPAPANWRDSADHIHVGSYNPSETLLATSPSTRIGDEELDMSEDSSASVPYRRSGSGKIASSFPGVGIHMAAKSSEISQALLEPNKAFGVAEKNGGASTEVQNRQSPSNSKPLKAKMTKAERRALQEAQRAAKGEAKKPGDAPGKAVKQPSAMRDSTATPSVVSTDKRGGDRTHDKERKKDAPPPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKVGLQYMAGDLHGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRIVVVDSRPKLEGQALLRRLIGRGLSCTYTHINAISYVMQKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDTISKVPGRKDINLDNLTAKEQLQHLNLMYDATPSDYISMIVTDYGMCASDRAGVSERAPVDIRRLKMTLHLEGSLLLLA 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28488245 28494987 + ClCG06G015090.2 Cla06g01493 275685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01493 653 Gene3D - 427 628 IPR042529 -
Cla06g01493 653 MobiDBLite consensus disorder prediction 20 63 - -
Cla06g01493 653 MobiDBLite consensus disorder prediction 109 138 - -
Cla06g01493 653 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 622 - -
Cla06g01493 653 MobiDBLite consensus disorder prediction 227 241 - -
Cla06g01493 653 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 622 - -
Cla06g01493 653 MobiDBLite consensus disorder prediction 36 51 - -
Cla06g01493 653 SUPERFAMILY NagB/RpiA/CoA transferase-like 287 624 IPR037171 -
Cla06g01493 653 MobiDBLite consensus disorder prediction 242 272 - -
Cla06g01493 653 Pfam Initiation factor 2 subunit family 333 621 IPR000649 GO:0044237
Cla06g01493 653 MobiDBLite consensus disorder prediction 171 188 - -
Cla06g01493 653 MobiDBLite consensus disorder prediction 190 217 - -
Cla06g01493 653 MobiDBLite consensus disorder prediction 168 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01493 Cla-Chr6:28488245 Cla09g00127 Cla-Chr9:1270848 1.42E-11 dispersed
Cla06g01492 Cla-Chr6:28480294 Cla06g01493 Cla-Chr6:28488245 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01493 K03680 - csv:101214144 1135.17