Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01497 ATGCCACGACGCTCGACGATCTCTTTCAATGGGCGCAATATATCAAACATTTGGAACAAAACCACAATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCGATCGCCTCCTTCGATTCCGATCTTCTTCAACCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCGTATTCGTTTTTTCCGTTGGCTTCTGGGACACCTCTCGAACCGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAAATTATCAAAGAGATGTTACCCCCTGATGTACGGGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAACACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGAAACTTCTGCAGCAGGACTCATTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCTGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 699 45.49 MPRRSTISFNGRNISNIWNKTTITSDKNAYINNALPPPHHHLDRLLRFRSSSTGGIAVVIFRFRVFVFSVGFWDTSRTVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKLLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28511397 28515542 - ClCG06G015130.2 Cla06g01497 275689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01497 232 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 151 IPR003958 -
Cla06g01497 232 PANTHER PROTEIN DR1 HOMOLOG 78 231 IPR044255 -
Cla06g01497 232 Gene3D Histone, subunit A 76 220 IPR009072 GO:0046982
Cla06g01497 232 SUPERFAMILY Histone-fold 84 218 IPR009072 GO:0046982
Cla06g01497 232 MobiDBLite consensus disorder prediction 208 232 - -
Cla06g01497 232 MobiDBLite consensus disorder prediction 216 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01497 Cla-Chr6:28511397 Cla10g00422 Cla-Chr10:5674336 1.61E-15 dispersed
Cla06g01497 Cla-Chr6:28511397 Cla02g01361 Cla-Chr2:27936449 4.19E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61315 PF00808 CBFD_NFYB_HMF 6.20E-22 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01497 K21751 - csv:101214627 285.034