Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01499 ATGGAATCAGACGAAGAAGATTTCATTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAAGAAATCTGTGGCTGACGCTTCTGGTACCATGCGAAGCCTCCCACACTGGAAACAAGAGGTTAGAGATGAGGAAGGGCGTAGAAGATTTCATGGAGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCAAAAGAAGGTTGGACTCCACAGTCATTTACGTCGTCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTGAATTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGTCGAGGCCTGGGGACATCTTCTCAGTTTGATACATTTGGGTTCACAGCAGTAGAGCTTGCTCGTAAACAAGCTGACAAGGAGCAACAACAGAGGCCGTCTGCCATTCCTGGACCTGTTCCTGATGAGTTAATTGTTCCAGCTGCAGAATCCATAGGTGTGAAGTTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCACGAGCTAATTCCCTTTATGATGATCAGCCACTTTTAGTTACCTATCAAGCTAACTACCACAACTTGTTCACTACAGATGCTCGAAGAGATGCACGAAAAGCATTTCTAGCATTTTCAGCTAATGATGTGAAATCGGAAATCCCCAGTTCTGAACCATTTCAGGAGGATGATGATATTGTTTCTCCTCAACCTGCCAAGGGTGATATTTCGTCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCACGGTTTAGGTTTTGATCCTTACAAGCATGCACCGGAGTTTAGGGAAAAGAAAAGTGCACGCACAGCTGGGAATCAGGAGGGTTACAAACAAATTTTCTCCACGAAGAATAATCTTTTTGGCTTTAGGACTGAGAGGATTGCTTCTGGCTTTGGCATTGGGGCACTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCTGGTTATGAGTTTGAGGAAACATATATACAAGAAGACGATGAACCACCTTCTAAATTGATCACAGATGGGAAACAAAAGTTGATTGGAAAAAAACTTGAGGGTGTCTTGCCTGGATTTAGAGTTGCCTTGAAATCTGACTACCAGTTGGAGAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCGCAGCACAAATTTGTAGGGCCCCTCAATGGTGGCTATAAGCTTGCTGACACCCCTCCTGTCGAGGTTCCTCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGAGTGGCGACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAGTGGAGGAACTGGCCATGAATATTATTCAAGGAAGCTATGGGAGGAGCAACTGAAGCGCGGGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCAAGCTTGGAGAAGATGACAGCTGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGCTCTAAAGAGTTGAATCCACTTCCACCCGCAACTTCTGATGAGAGAAACAATGGGATTTTTGGAGAGGTTGGGAGGTCCCATGAGAAGGTTTGGCAGGGTGGGATGCCAGAGGTTGTCAAACCTTTCAAGGATGATCCAGCTAAGCAAGAAAGATTTGAGCATTTTTTAAAGGAAAAGTATCAAGGAGGCCTGCGCACTGGTGCTCCTGTTGGAGCTATTAACATGTCAGAAGCAGCTCGTGCACGTGAACGCTTGGACTTTGAGGCTGCTGCAGAGGCAATTGAGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCCGAGCATTTTGTGGATTTTTTAGCCACCGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGTCAAAGATACAAAACTAGAAAGTTTAATGATGGAGAAAATGTTCCCAAAACGGGAAGAATATCAGTGGCGTCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGAAAGCCACCACCAGCTCCTAGGACGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAACCGACAAAGGTTGAGGAGCCTTTAACCCCAACACCTCATTCATTACCTCAATCGAATGCTGGAGAAAAAGACAAAGATGCATCTGAAAATGTAAATGAAAATGTAGAAGTTGAATGTGTTAATCGGCCTATTGATCTATATAAGTCAGAAGACGAAGAGAGTACATCAACTCTCAAGCAAGCCGAGGATCCTAAAAAGAAAGTTGAAGTGGCTAATACAACTCTAAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCTCCAGATCTGCCTCCATCAAAGAAAGGCCAAACTTCAGGTCCTCAGACAGAAGCTGTACCTGTAGGTGAGCAAAAGACCCATATCCTTTCAGTTGAAGATAAGTCTTATCCGAACCCATCTTCCACTGTGATTCTATCAGACCTTCGAATGACAGGCACCACGGAACTTGATCTAAATGGCAGAAAAGAAGACAATGAACTCAATCATAACTCAGCTGGAACTGGCGGTAAAATTATGGAGACCAGTTCTTCCAAGAAAACTTTGGGTAAAGTTTATGAAGAAAAGATGTATAAGGACAAGGGAGATAGGAAGGCTAACAACAGGCGTGTTGACGACATTCATCGTGATTGTAGCAACAGCTCATCATCAGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCACAGGTATAAAAGTAGCGACTCAGAGGATAGTGGATCAAGTGATTATCGTATGAAAGAGCACTCTAGATCACGAGATAGAAAGAAAGGATCTTCTCAAGAAAAGAAGAGCCGGAGAAAACACTCAAAACATCACAAGCACAGACGTAGAGATTCTTCCCCCAGAGATCATCATCGCTCTGGAAAAGATCGTACTGCATCCGAGAGATAG 3036 43.38 MESDEEDFIFYGTPIEREEEINSRKKKSVADASGTMRSLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSSQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGVKLLLKMGWRHGRAIKDSRANSLYDDQPLLVTYQANYHNLFTTDARRDARKAFLAFSANDVKSEIPSSEPFQEDDDIVSPQPAKGDISSSQSTPVYVINPKQDLHGLGFDPYKHAPEFREKKSARTAGNQEGYKQIFSTKNNLFGFRTERIASGFGIGALEELDVEDEDVYTSGYEFEETYIQEDDEPPSKLITDGKQKLIGKKLEGVLPGFRVALKSDYQLERFDPPVIPKDFIPQHKFVGPLNGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLSGGTGHEYYSRKLWEEQLKRGDQPKPQFDDKLSPSLEKMTAESRGKILGEKPLARSSKELNPLPPATSDERNNGIFGEVGRSHEKVWQGGMPEVVKPFKDDPAKQERFEHFLKEKYQGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAEHFVDFLATGGMQFTSGGVEEVKDTKLESLMMEKMFPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRTRSKLDTLIFTSNSVKPTKVEEPLTPTPHSLPQSNAGEKDKDASENVNENVEVECVNRPIDLYKSEDEESTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTSGPQTEAVPVGEQKTHILSVEDKSYPNPSSTVILSDLRMTGTTELDLNGRKEDNELNHNSAGTGGKIMETSSSKKTLGKVYEEKMYKDKGDRKANNRRVDDIHRDCSNSSSSEDEKRRKRSRRHRYKSSDSEDSGSSDYRMKEHSRSRDRKKGSSQEKKSRRKHSKHHKHRRRDSSPRDHHRSGKDRTASER 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28520449 28531287 + ClCG06G015150.2 Cla06g01499 275691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01499 1011 MobiDBLite consensus disorder prediction 712 748 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 68 89 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 71 89 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 863 1011 - -
Cla06g01499 1011 Gene3D Surp module 411 484 IPR035967 GO:0003723|GO:0006396
Cla06g01499 1011 MobiDBLite consensus disorder prediction 483 517 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 945 973 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 483 539 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 877 894 - -
Cla06g01499 1011 SMART surpneu2 430 482 IPR000061 GO:0003723|GO:0006396
Cla06g01499 1011 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 998 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 21 48 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 228 255 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 895 936 - -
Cla06g01499 1011 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 998 - -
Cla06g01499 1011 MobiDBLite consensus disorder prediction 974 997 - -
Cla06g01499 1011 SUPERFAMILY Surp module (SWAP domain) 411 481 IPR035967 GO:0003723|GO:0006396
Cla06g01499 1011 ProSiteProfiles SURP motif repeat profile. 432 476 IPR000061 GO:0003723|GO:0006396
Cla06g01499 1011 Pfam Protein of unknown function (DUF1604) 39 119 IPR011666 GO:0006397
Cla06g01499 1011 Pfam Surp module 432 479 IPR000061 GO:0003723|GO:0006396
Cla06g01499 1011 MobiDBLite consensus disorder prediction 803 830 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01499 K13123 GPATCH1; G patch domain-containing protein 1 - csv:101222702 1647.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01499 Cla_Chr06 FPKM 0.118457 0.0 0.0 0.0 0.182391 0.22558 0.119491 0.0 0.082872 0.0