Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01510 ATGTTTCTGTCGTCCTTCCTTCGATTTTTTACCTGCATTTGGCAATTGCAACAGCATCTCACACATGGGGCTAAAGCAAAAAACCCCTCCTCCCACAAAGAGAAGGGAAAAGTCTGTGCGAATCACTCACAGCAACGCATTCAAGTCGTTTGTAGCTTTCTCCACCTGTCTTCCTTTTGGCCAGTCGATCGCGACCCATTAGTTCAGAGAATCGGAACACATGTCCTCTCACTCAGACGCCCCACCATTCATGTTCATGAAAAAGGAACACCCATTTACGAAAAGGGGAAGACCCCACTTGAAAACATCCAAAAATTAGTGCTCAGCCATTCGTTTGAATTTCAGAAACCAGGCAGAAGCTACAGAAATTCAACAGCGCTTACTGTTATTACTGAGAATAGTTCTTGTTCTTTCTTCCATAAGCAAACAGAAAAAACTTCTAAATGGCTCAAGATACGTCTCCTAGCATTGAATCACCTCGGAGGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGAGTGGCAGGACCATCGGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATACCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATTGATGGCAACTTTGATGATCCACGCCTAACAGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAACCTGTCCAGGTTCCTATTTATGATTTCAAGACTAGCAGTCGCGTGGGTTACAGGACTCTTGAAGTTCCCGAATCAAGGATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTGCGTCCATTGCTAGATCTTCGTGTATCAGTGACCGGTGGTGTTCATTTTGACTTAGTGAAACGGGTACTACGTGATATTCAGCGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTCTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACTGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACCGGTTTCCAGAATCCTACTTATATTCTTAAGTCAATGAAAGCAGTACCTGTGGATCAAATTAAGGCTGTTATATCCGAGAATCACAAGGAGTCTACTGAGGAAACTTATGACATTTATCTTCTACCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATATCACCTAGAATAACTTTTGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGATACACAATTGCCACTATTCTTAAAAGAAGCAGCCACATATTCTCTGATGATAGGGTGTGTATAAAGATTGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCACGTTAAATGTGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTATATTGAACAGATACAGCTGGAGAAGCTTGTTAATGATGTTATGGCCTTGCCGGATGATTTAAAAACCAAGCTCAGCATAGACGACGAGTCACTTTCGAGTCCAAAGGAAGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAGATTTCTACTCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCTAAGATCTGTACTAGAAAAATTTCTGCTAGCCAGCAGAACTTGGTTTCACAATCCGATGCGTGCAACAATGGCTCCGGAGCAACTTCAATTTTCATATCTGGCTTGAGTAACGGTGCCTTAACCGGATCGCTACTGCCTCATTCTTCATCATCCTCCCAATTGGCCAAGGAATCTCCCTTTCTGGAAGAGATACAAAACATAGCACGGGCGCAGCGTCAAATCATTCTCCAAGTCGACAATTTGAGCAATCTTCTCCGGGAGCACTTGAGTGAGAGGGGTCGCCGGGGAAAAGTTGACGACGAAGGGAGGTGGAGGATTACTGATCTTGAATCCATCAGCACCCCACTTTTGCTTACACTTGCAGTTGAAATTAAATCTTCAGCTATTACACCGCCGACCACCCCGCCCCCTTCTGCTCAGACTTCTTCTTCGGCGACACTCCCGCGGCCACAAGCGCAAGAAAAGTCAACCATGCCGACCGTCAGCGTCGGAAGAGATCTTCTATTTGCTGCCATTGGAAGAACTTATACGCAGGAAGAGTTTGAAGAGCTGTGCTTTAGTTTTGGAATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAACAGATACGATTTGCTCTGTCTTGAAGGACTTGCTCAAGCCCTGCGCATTTTTAATAAGCAGGAGGAGACACCCAGATATACATTAGCCAATATCAGCAGGGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCTTGATCCGTCCTTACATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGCGAGTTTCATTGATCTGCAAGAGAAACTTCATCAGAACATATGTCGACGAAGAAGTCTTGTTGCCATTGGAACACACGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCAACAGCTATAAACTTTGTGCCACTGAAACAGACGAAGAATTTCAGAGCTGATGAGCTAATGGAGTTCTATAAATCAGATTTAAAGCTGAGGAAGTACTTGCCCATAATAGAAAAATCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCACCAATTATCAATGGTGCACATTCGGCTATTACATTGAAGACAAAGAATGTGTTTATTGAATGCACCGCGACTGATCTGACAAAGGCAAATATTGTCTTGAATACTATGGTAACTATGTTTTCAACGCTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAGCTATCTCTCTACAATATGGAAGTTTCTGTGTCTTATATCAATAAGTGTATTGGAGTCTCATTGGAGGCAGAAGAGGTTATCAATTTGTTAAATAGGATGCAATTGCACGCTGAACAGTCAGTATCTGGTGACAAGTCTAGTATAACTATATCTGTGCCCCCAACAAGGAGTGATGTGCTTCACCCATGTGACGTCATGGAGGATGTTGCTATTGCTTATGGGTATAATAACATCTCCAAGAGTAAACCAGCATCTTTGCAGCCTCTACCATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATCCTATGTTCTTATAAAGAGAACTTCGCCATGCTAAAGCGTGAAGATGATAAATCTACCGCTGTTGTCATTGGAAATCCTCGTTCAACTGATTTTGAGGTTGTACGAACCAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGACACAATAAGGATCACCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTGCTGGATGATGCAAAAGATGTTGGGGCAAGAAATCATCGTCATCTTGCTGCTCTATATTGCGGTGCCAATTCTGGATTTGAATTGATTCACGGTTTGGTCGACCGAATTATGGAAGTCGTAGGAGCTCCTTTTGTTTCAGTTGGCGATGAAACTGGGTATTACATAAAATGTTCAGATAACCCGGAGTTTCTTACTGGTAGACAAGCTCACATCATTTATAAAGGAAAGAAAATTGGCACGTTTGGCATTGTTCATCCCGAGGTTTTGGATAACTTCGACATTCCCGATCCATTATTCATTCCACAGTCGATGAGACGTGTTTCTGGGTTTTCCTCAGCTAACTCTCTCATGAATCTTCTCCAAACACCATATGCGTCCCATGTTTCGAAAACCCGAAGGCCCTTTCGTTTCAACTTTTAA 4224 42.28 MFLSSFLRFFTCIWQLQQHLTHGAKAKNPSSHKEKGKVCANHSQQRIQVVCSFLHLSSFWPVDRDPLVQRIGTHVLSLRRPTIHVHEKGTPIYEKGKTPLENIQKLVLSHSFEFQKPGRSYRNSTALTVITENSSCSFFHKQTEKTSKWLKIRLLALNHLGGVLAFCEIKFRVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKPVQVPIYDFKTSSRVGYRTLEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSMKAVPVDQIKAVISENHKESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDRVCIKIDWLEQLNRKYIQVQGKDRVHVKCVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKISASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPFLEEIQNIARAQRQIILQVDNLSNLLREHLSERGRRGKVDDEGRWRITDLESISTPLLLTLAVEIKSSAITPPTTPPPSAQTSSSATLPRPQAQEKSTMPTVSVGRDLLFAAIGRTYTQEEFEELCFSFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEETPRYTLANISRESMHKMHVKPETSLIRPYIVCAVLRDMTFDEAIYASFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQTKNFRADELMEFYKSDLKLRKYLPIIEKSPVYPILYDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPELSLYNMEVSVSYINKCIGVSLEAEEVINLLNRMQLHAEQSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGYNNISKSKPASLQPLPLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFAMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKIFEVGDVSLLDDAKDVGARNHRHLAALYCGANSGFELIHGLVDRIMEVVGAPFVSVGDETGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLDNFDIPDPLFIPQSMRRVSGFSSANSLMNLLQTPYASHVSKTRRPFRFNF 1407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28614671 28631022 - ClCG06G015260.2 Cla06g01510 275702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01510 1407 Coils Coil 603 630 - -
Cla06g01510 1407 SUPERFAMILY Putative DNA-binding domain 1093 1167 IPR009061 -
Cla06g01510 1407 Pfam B3/4 domain 905 1066 IPR005146 GO:0003723|GO:0004826
Cla06g01510 1407 Gene3D - 787 875 - -
Cla06g01510 1407 Pfam Phe-tRNA synthetase beta subunit B1 domain 787 875 IPR040659 -
Cla06g01510 1407 Gene3D - 1092 1166 - -
Cla06g01510 1407 Pfam CYTH domain 372 507 IPR023577 -
Cla06g01510 1407 Pfam Phosphoribulokinase / Uridine kinase family 173 339 IPR006083 GO:0005524|GO:0016301
Cla06g01510 1407 Pfam tRNA synthetase B5 domain 1094 1163 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cla06g01510 1407 MobiDBLite consensus disorder prediction 757 788 - -
Cla06g01510 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 339 IPR027417 -
Cla06g01510 1407 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 787 1365 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Cla06g01510 1407 MobiDBLite consensus disorder prediction 768 788 - -
Cla06g01510 1407 CDD UMPK_like 173 342 - -
Cla06g01510 1407 ProSiteProfiles B5 domain profile. 1089 1168 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cla06g01510 1407 SUPERFAMILY Putative DNA-binding domain 791 879 IPR009061 -
Cla06g01510 1407 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 1176 1367 IPR041616 -
Cla06g01510 1407 SMART B5_2 1091 1163 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cla06g01510 1407 CDD PheRS_beta_core 1178 1368 IPR041616 -
Cla06g01510 1407 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 787 1367 IPR045060 GO:0004826|GO:0006432
Cla06g01510 1407 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 787 1367 - -
Cla06g01510 1407 ProSiteProfiles CYTH domain profile. 351 513 IPR023577 -
Cla06g01510 1407 SUPERFAMILY CYTH-like phosphatases 363 510 IPR033469 -
Cla06g01510 1407 Gene3D - 172 350 IPR027417 -
Cla06g01510 1407 SMART B3_4_2 904 1066 IPR005146 GO:0003723|GO:0004826
Cla06g01510 1407 Gene3D - 886 1090 IPR020825 -
Cla06g01510 1407 Gene3D Bira Bifunctional Protein; Domain 2 1177 1370 IPR045864 -
Cla06g01510 1407 SUPERFAMILY Class II aaRS and biotin synthetases 1160 1367 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01510 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] K00876 csv:101210257 1114.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01510 Cla-Chr6:28614671 Cla11g00120 Cla-Chr11:1509940 1.40E-48 dispersed
Cla05g02359 Cla-Chr5:35168064 Cla06g01510 Cla-Chr6:28614671 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01510 Cla_Chr06 FPKM 25.537735 26.315887 11.199329 11.878778 15.710483 13.016745 18.193068 0.0 0.0 0.0