Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01511 ATGGATTTGGAAGGCAGTCCGTCTCTTCTTCAATTTCACATGCCCGCTGAGTGGGAACCCCATTCCCAATGTTGGATGGGTTGGCCTGAACGGCCTGATAATTGGAGGGATAATGCAATCCATGGACAACGTGTATTTGCTAAGGTGGCATCTTCAATCTCGAAGTTCGAATCGGTGACTGTCTGTGCTACTGCCTCCCAGTGGGAGAATGCCCGCAGTCAGCTACCAGCAAATATTAGGGTTGTTGAGCTAGGAATGAATGACTGCTGGTTCCGCGATACTGGGCCCACGTTTGTTGTAAGGAAAAGAATGTCAAATTCTGGTACAGCAGTGGAATCTGTCGCAGGAATTGATTGGAACTTCAATAGTTGGGGAGGTGTCGAGGATGGTTGTTACGCCGATTGGAGTCTTGATCTTCTAGTTGCAAGGAAGATCCTGGATATTGAGAGAGTTCCTAGGTTTTTGAACACAATTGTTCTTGAAGGTGGATCCATCCATGTAGATGGAGAAGGGACTTGTCTTACCACGGAGGAGTGTCTCTTAAATAAAAACAGAAATCCACATCTGTCAAAGGGTCAGATAGAGGATATACTGAAGGCATATCTCGGGGTGGAGAAGATCATTTGGCTGCCTCGTGGACTATACGGCGATGATGATACAAATGGTCATATCGATAATATGTGTTGTTTTGCAAAACCTGGAGTGGTTCTGTTATCTTGGACTGATGATCAAACAGATCCTCAGTATGAACGGTCTATGGAGGCATATTCTGTTCTCTCAGAAGTTACTGATGCCAAAGGTAGGAAATTGGAAATAATAAAACTCCATGTGCCAGGGCCACTTTATTTGACAGATGAAGAGGCTGCAGGAATCGTTCAGGAGTTTCACATCTCACTTCGGGAATCTGACTTTGACATTTCTCGATTGGGAGGCGGGATTTCGAGTCCGCGCGGTGGAGATGTGTGGATCAATGAGAACAGATTCAGGATCGTTAGGCAGCTCGGTGAAGGTGGCTTTGCTTATGTCTTCCTCGTCAAGGAGGTGCTCGCTGATTCATCTTCAGACGCTGTTCGCACTGGTTTGCGCAAGAAATTCAAGGACTCCACTCATCTTTCTGACGATGGTTCGTATGCATTGAAAAAGGTGCTCATTCAGAATAATGAACAACTGGAATTGGTGAAAGAGGAGATTCGCGTTTCATCTCTGTTTAGTCATCCCAATCTACTTCCTCTTCTTGATCATGCTATAATAGCTACTAAGCCTACCCAAGAACGATCTTGGAACCATGAAGCATACTTACTATTTCCAGTACATTTGGATGGAACATTATTGGACAATGCAAAAACCATGAAAGCAAAAAAGGAGTTCTTCTCAACATCAGATGTTTTGCAAATATTTCGACAGCTTTGTGCGGGTCTCAAGCACATGCACAATTTTGATCCCCCATATGCACACAATGACATCAAACCGGGCAATGTTCTCATAACTCGTAGAAAGGGCCAGCCTCCTCTTGCTATATTGATGGATTTTGGAAGTGCCCGACCTGCAAGGAGGCAAATTGGCTCCCGTTCAGAAGCACTGCAGTTGCAGGAATGGGCATCTGAACACTGTTCTGCTCCTTTCCGGGCTCCTGAGTTGTGGGATTGTGCAAGCCATGCAGATATTGACGAAAGAACTGATATTTGGTCTTTAGGATGCACGCTGTATGGGGTATCCCCATTTGAATATGCGCTTGGGGAATCTGGAGGAAGCTTACAGTTAGCAATCGTAAATGTTCAGATCAAGTGGCCGGCTGGACCAACTCCTCCATATCCTGATGCTCTTCATCAGTTTGTGAAGTGGATGCTTCAGCCACAGGCTGCAGTCCGTCCGCGCATCGATGATATAGTAATTCATGTTGACAAGCTTATCTCAAAGTTCTCTAACTGA 1929 45.36 MDLEGSPSLLQFHMPAEWEPHSQCWMGWPERPDNWRDNAIHGQRVFAKVASSISKFESVTVCATASQWENARSQLPANIRVVELGMNDCWFRDTGPTFVVRKRMSNSGTAVESVAGIDWNFNSWGGVEDGCYADWSLDLLVARKILDIERVPRFLNTIVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKGQIEDILKAYLGVEKIIWLPRGLYGDDDTNGHIDNMCCFAKPGVVLLSWTDDQTDPQYERSMEAYSVLSEVTDAKGRKLEIIKLHVPGPLYLTDEEAAGIVQEFHISLRESDFDISRLGGGISSPRGGDVWINENRFRIVRQLGEGGFAYVFLVKEVLADSSSDAVRTGLRKKFKDSTHLSDDGSYALKKVLIQNNEQLELVKEEIRVSSLFSHPNLLPLLDHAIIATKPTQERSWNHEAYLLFPVHLDGTLLDNAKTMKAKKEFFSTSDVLQIFRQLCAGLKHMHNFDPPYAHNDIKPGNVLITRRKGQPPLAILMDFGSARPARRQIGSRSEALQLQEWASEHCSAPFRAPELWDCASHADIDERTDIWSLGCTLYGVSPFEYALGESGGSLQLAIVNVQIKWPAGPTPPYPDALHQFVKWMLQPQAAVRPRIDDIVIHVDKLISKFSN 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28635390 28646310 + ClCG06G015290.2 Cla06g01511 275703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01511 642 Gene3D - 3 314 - -
Cla06g01511 642 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 317 641 - -
Cla06g01511 642 ProSiteProfiles Protein kinase domain profile. 328 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01511 642 Pfam Porphyromonas-type peptidyl-arginine deiminase 13 282 IPR007466 GO:0004668|GO:0009446
Cla06g01511 642 Gene3D Transferase(Phosphotransferase) domain 1 315 641 - -
Cla06g01511 642 SMART serkin_6 328 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01511 642 TIGRFAM agmatine_aguA: agmatine deiminase 7 296 IPR017754 GO:0009446|GO:0047632
Cla06g01511 642 SUPERFAMILY Protein kinase-like (PK-like) 317 632 IPR011009 -
Cla06g01511 642 Pfam Protein kinase domain 369 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01511 642 CDD STKc_16 327 638 - -
Cla06g01511 642 SUPERFAMILY Pentein 4 295 - -
Cla06g01511 642 PANTHER - 317 641 - -
Cla06g01511 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01511 K08856 STK16; serine/threonine kinase 16 [EC:2.7.11.1] - csv:101210993 642.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01511 Cla-Chr6:28635390 Cla06g00905 Cla-Chr6:14489112 4.41E-11 dispersed
Cla10g01200 Cla-Chr10:26659224 Cla06g01511 Cla-Chr6:28635390 5.73E-16 transposed
Cla04g01124 Cla-Chr4:26425301 Cla06g01511 Cla-Chr6:28635390 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g404 . . . . . . . . . . . . . Car11g00217 Sed12g2040 . Cpe04g01433 Bhi02g00042 Tan09g1985 Cmetu02g1376 . Hepe09g0304 . . Cla06g01511 Cam06g1666 Cec06g1727 Cco06g1724 Clacu06g1632 Cmu06g1581 Cre06g2391 . . . Cone19ag0023 . . . . . . . . . . . . . . Cmo11g00242 . . . . . . . . . . . . . . . . . . . . . Csa01g00317 Chy02g02424 Cme02g01793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010908 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80656 PF00069 Pkinase 1.30E-24 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01511 Cla_Chr06 FPKM 13.093418 10.977684 8.601525 7.815998 13.420698 14.983597 12.074261 22.993567 27.186546 18.300045