Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01515 ATGGCGAAGCTGCTTCTCCATCTTCAAGCTCCTCATCTCGTTTCTTCACTCAATCGCGGAACCCTTTCATTCATACTCTCCAAACCAATTCCACTCCTCTCTTCTTCTTCTTCCTTACAATGCCGCTTCACTCACGCTCTCTCCTCTTCTTCTGCTTCACGCCGCTGCTTCTCTGTTCGCGCATTCGACGACTCTGCATCAGAGACCAAACGCGTTGAAAAAGAAGAAACAGACGCTTCAAACGAGGCTCCGATGAGTAGCGAGGGCGTCAGGACTCGCGATGAGGATTATCCAAGTGGAGAATTTGAGTTCGAGAAGTTTGGCCCGTGGAGGAGCTTTTTGGTGAAGCTTAAGATGCTGGTGGCCTTTCCTTGGGAGCGCGTTCGCAAGGGCAGCGTATTGACTATGAAATTGCGAGGGCAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAAATCTGCGAGAACTTTGTCAAAGCCGCATATGATCCTCGTATTTCTGGGATCTATTTGCAAATTGAGGCTCTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATCCTGAATTTCAAGAAATCAGGTAAATTTATCGTTGCCTACATTCCTACGTGTCAAGAGAAAGAATACTACCTGGCATGTGCATGTGAGGAGATATATGCGCCTCCAAGTGCTTATGTTTCTCTGTTTGGTTTGACTGTTCAAGCTTCATTTCTCAGAGGTATTTTTGATAAAGTAGGGATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCAGGTGATCAACTAGCACGGAGAAATATGTCAGAAGAAAATTGTGAAATGTTGACAACATTGCTTGATAACATCTATGACAACTGGCTGGATAAAATTTCTTCAATAAAAGGAAAGCAAAAGGATGATGTTGAAAGCTTTATTAATGAAGGAGTGTACCAAATTGAAAGGCTAAAAGATGACGGCTGGATCACCAACATACAGTATGAGGACGAGGTTCTCTCTATGCTAAGTGAAAGACTTGGTCTGCCAAAGGACAAAAAGGTTCCCACGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCATTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTGATTAGAGCTGGTGGAAGCATTACTCGTGTAAAAAGTCCTTTAAGTGTTCCCAGTTCTGGTATTATTGGGGAGCAATTCATTGAGAAGATTCGGAGTGTTAGAGAGTCGAAAAGATTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCATCAAAACCTGTTATTGCATCCATGGCTGATGTGGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACAATTGTCGCAGAAGATCTAACCTTAACTGGTTCTATTGGTGTTGTCACAGGGAAGTTTAACTTGGGAAAACTATATGAAAAGATTGGCTTCAACAAGGAAATAATATCAAGGGGAAGATTTGCTGAGCTTCTTGCGGCTGAACAACGACCTTTCAGACCGGAGGAAGCTGAACTCTTTGCCAAGTCTGCACAAAATGCGTACAAGCAATTTCGGGACAAAGCAGCCTTTTCCAGATCCATGACTGTGGATGAGATGGAGAAAGTTGCACAAGGAAGGGTTTGGACTGGTAAAGATGCAGCATCCCGTGGTTTAGTGGATGCTATTGGTGGCTTTTCTCGGGCTGTTGCAATAGCAAAACTGAAAGCCAACATTCCTCAAGACAGCCAGGTTAATCTTGTGGAATTATCGAGACCGTCACCAACGCTGCCGGAGATATTAAGCGGAGTAGGGAGTACAATTATTGGAGTTGACAGGACAATGAAAGATCTTCTGCAAGACCTTGCTTTGGCAGAAGGAGTTCAAGCTCGTATGGAAGGAATTATGCTGCAAAGAATGGAAGGATTTTCTTATGGTAACCCCATACTTAGTTTGATAAAAGATTACTTCAGTTCCCTCTAA 2049 43.83 MAKLLLHLQAPHLVSSLNRGTLSFILSKPIPLLSSSSSLQCRFTHALSSSSASRRCFSVRAFDDSASETKRVEKEETDASNEAPMSSEGVRTRDEDYPSGEFEFEKFGPWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRISGIYLQIEALNCGWGKVEEIRRHILNFKKSGKFIVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYDNWLDKISSIKGKQKDDVESFINEGVYQIERLKDDGWITNIQYEDEVLSMLSERLGLPKDKKVPTVDYRKYSRVRQWTIGLSGGGDQIAVIRAGGSITRVKSPLSVPSSGIIGEQFIEKIRSVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMAAGTIVAEDLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFRPEEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAASRGLVDAIGGFSRAVAIAKLKANIPQDSQVNLVELSRPSPTLPEILSGVGSTIIGVDRTMKDLLQDLALAEGVQARMEGIMLQRMEGFSYGNPILSLIKDYFSSL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28662877 28671264 + ClCG06G015340.1 Cla06g01515 275707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01515 682 PANTHER PROTEASE 4 33 681 - -
Cla06g01515 682 MobiDBLite consensus disorder prediction 68 94 - -
Cla06g01515 682 Gene3D - 491 557 - -
Cla06g01515 682 CDD S49_Sppa_N_C 381 596 IPR002142 GO:0006508|GO:0008233
Cla06g01515 682 SUPERFAMILY ClpP/crotonase 120 337 IPR029045 -
Cla06g01515 682 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 393 595 IPR004635 GO:0006508|GO:0008233
Cla06g01515 682 Pfam Peptidase family S49 199 348 IPR002142 GO:0006508|GO:0008233
Cla06g01515 682 Pfam Peptidase family S49 450 600 IPR002142 GO:0006508|GO:0008233
Cla06g01515 682 Gene3D - 131 367 - -
Cla06g01515 682 PIRSF Protease_4_SppA 74 682 IPR004634 GO:0006465|GO:0008233|GO:0016021
Cla06g01515 682 CDD S49_SppA_67K_type 134 347 - -
Cla06g01515 682 SUPERFAMILY ClpP/crotonase 373 587 IPR029045 -
Cla06g01515 682 Gene3D - 378 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01515 K04773 sppA; protease IV [EC:3.4.21.-] - csv:101211243 1229.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g407 . . . Bda15g00647 Bpe12g00506 . . . . . . . . Car11g00213 . . . . . . . . . . Cla06g01515 Cam06g1670 Cec06g1731 . Clacu06g1636 Cmu06g1584 Cre06g2395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01515 Cla_Chr06 FPKM 14.516824 16.833139 49.789768 49.566818 14.989188 13.868687 15.83451 43.994404 43.324917 47.398636