Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01516 ATGGCTGTGGTGGCGCTGCCATTCTCCGCCCGCCACCGCCCTCCAATCATATATAAACCAACTCCAACTCCCACATCAATTTTAAAAAATTCGCTTATTTCAACTTCAACTCCAAAATCATCCTTCTCTGTCTTTGCTCAGTCCCATCAGTCTCAATCCATCAACTCGGTTTCTCAGCTCTCACTTCTCGAAGAGATTTGCAAGCTCTGTGAAGCGGGTGATCTCAATGGAGCTCTCGATTTTCTTCAGAGAGCCTGGAAGAACAATGCTGATCATGATTTGGTGCAGAGAAAAGAGGCCATGGGTGTGTTGTTGCAGAAATGTGGGCAGCATAAAAACGTGGAAATTGGCCGCAAACTTGATGAAATGTTGTGCGTCTCCTTTCAGTTCAGCGGCGACTTCGTTCTCAATACCCGTCTCATCACTATGTACTCGGTTTGTGGATATCCGTCGGATTCTCGATTGGTCTTTGATCGTTTGCAGAATAAGAATTTGTTTCAATGGAACGCACTTGTTAGTGCTTACGCTAGAAATGAACTGTACGACGAGGCGATTCACACTTTCATTGAGTTGATATCGGTAACTGAATTTCAACCTGATAATTTTACATTGCCTTGCATGATTAAGGCCTGTACTGGGAAGTGTGATGTTCATTTGGGGCAATCGGTTCATGGGATGGCGGTGAAAATGGGGTTGATCATGGATTTGTTTGTGGGTAATGCGATGATTTCGCTGTATGGAAAATGTGGGTTTGTAGACGAAGCCATCAAGGTGTTTGACAAAATGCCCGAACGAAACTTGATCTCTTGGAATTCGTTGATTTGTGGGTTTTCTGAGAATGGATTTTGGCTGGAAGCTTATGGTGCGTTTAGGAGTCTTTTAGACGGTGGCGATGGCTTCATTCCGGATGTTGCTACAATGGTAACTCTGTTGCCTGTGTGTTCAGGAGAAGGAGATGTAGATATGGGAATGGTAGTTCATGGGATGGCAGTGAAACTGGGGCTTGTTCATGAACTAATGGTGTGCAATGCTTTAGTTGACATGTATTCAAAATGTGGTTGCTTATCGCAAGCAGCGATTTTATTTCGTAAGATTGAGAACAAAAATGTAGTTTCTTGGAATTCCATGATAGGTGCATATTCTAGGGAAGGATTTGTATATGAAACGTTCGAACTGTTGAGAAAGATGTGGATGGAAGAAGAAATTATGGAAGTAAATGAGGTCACCATTTTGAATTTGTTACCTGCTTGTTTGGAAGAAACTGAACTGTTGAGCTTGAGGGCACTTCATGGATATTCATTCCGATATTCATTTCAATACGACGAGTTGATAAATAATGCATTTATAGCAGCCTATGCGAAGTGTGGATCATTGATTTCTGCTGAGCATGTCTTCTTTGGAATGAATACTAAGTCAGTTAGCTCATGGAATGCAATCACAGGTGGATTTGCCCAAAACGGTGATCCAAGGAAAGCTTTAGATTTTTATTTTCAGATGACACGTTCGGGCTTCCTTCCCGATGAGTATAGCATCGTTAGCCTACTATTGGCTTGTGCCCGTTTGGGACATCTACAATATGGCAAAGAGATACATGGATTTGTGCTAAGGAATGGGTTAGAGATGGATTCATTTGTTGCTGTCTCATTGCTATCACTTTATATCCATTGCTCTAAACCTTCCTCTGCCAGAATTTACTTTGAGAGAATGGGAGACAAAAACTTGGTGTCTTGGAATGCAATGCTTTCAGGTTATTCTCAAAACGAACTTCCAAACGAAGCACTCTCTCTGTTTCGTCAAATGCTTCCTGAAGGACACGAACCTAACGAGATTGCCATAGTGAGTATTCTTGGGGCTTGTTCTCAGCTATCAGCTCTTGGTCTTGGAAAAGAAGTTCATTGCTTTGTCTTGAAAAACTATCTAATTGAAGACAATTTTGTTGCTTGTTCACTCATGGACATGTATGCCAAAAGCGGCTGTTTGGGACAATCTCGACAAATATTTAACGAGTTAAATGAGAAAGAAGTGGCTTCATGGAACGTCATGATCACAGGATTTGGTGTTCATGGACAAGGTAACAAGGCCGTGGAGCTATTTGAGGAGATGCAAAGATCAGGTAAGCAGCCTGATAGGTTCACATTTCTAGGAGTTCTTCAGGCATGTTGTCATGCTGGATTGGTGTCAGAGGGGCTATATTATCTTGCTCAAATGCAAAGTTTGTACAAACTAGAGCCAGAACTCGAGCACTATGCTTGTGTGATCAACATGCTGGGTAGAGCAGGCCGACTAAACGAAGCATTAAACCTCATAAATGAGATGCCTGAAGAACCAGATGCTAAAATCTGGAGCTCATTGCTCAGTTCTAGTAGAATTTATGGTGATCTAGAAATGGGAGAGAAATTTGCTGAAAAATTGTTAGCACTGGAAGCAAACAAAGCTGACAGCTATGTTTCGCTCTCTAACTTGTATGCAACAGCAGGAAAATGGGATCATGTGCGAATGGTGAGACAGAAAATGAAGGATCTCAGCCTTCAGAAAGATGCTGGCTGCAGTTGGATTGAACTTAGAGGTAAAATCTATAGTTTTATAGCTAGCGAAAACTCGAATCCAAGTTCAGACGAGATTCAAAAAATGTGGAATAGATTGGAGAAACAGATTGTGGAAATTGGCTACACACCTGATTCTAGTTGTGTTCTTCATGAATTGGAAGAGGTGGAAAAGATTAAGATATTGAAGGGGCATAGTGAGAAGCTTGCAATTTCTTTTGGCTTCTTAAAGACTAAAGAAGGCACTACATTGAGAATCTCCAAGAATCTAAGAATTTGTAGAGACTGTCACAATGCAGCCAAGTTTATAAGTTTGGCGAGAAAATTTTGTTGCACTGTTATTTCTTTCTTTCACAATTCGAAGTTTCGTCGTCTCTTTCTGATATCGTTCGCCGTTCGGAAAATCTTGAAGAGCGGCATGCCGTCGTCTGCGTCAGCTCCGGCCTCTCCTCCGTCGGCGTCTCATTCACAGAATTCTGCTACCCAACCTTCCCCTCGCAAACACTTGGCCGAGGCTGCAACCAATAATGACGGACTTTTTAATGCCGAGGAGAAGAAACCCGATTTGTCGGATCAATTTGAGTATGCCCTTTTCTTTTTCTTCCTCTCTATATTTGATTTGAAGTTGAAATTGGGGAAATTTATTGATTATGTACGTTTCTTTCCTCTAATTTTCTGCGAAACGAAATTGAACATGAAGTTTTGTACTCCGTACTATGCCTTTTCTTTTCGAAGTGAAGAAGATGAAACGATCAGAACTAATGTTGATGGATATCATCAATGGAAGACAAAATTCGAAAGAGATTTTGATAATTTCAATTCCAGTGAGAAGTACAAGAAATATGAATCTGACTACGCTCAACGCCTAATGGCCAAATACTTTTCAAAGAAAAACCTCTATGGAGGAAACATCTTTGAAGAGAACACAACAATAGACGACGAGATTATAAAGTCGAGCAAGTGGCCTTGTACAAGGTCCTTTGCAGATCCTTTGCAGGGTTTTGAAGATCACAGAAGCAGCTGTTCAACATCCGCCATGGAAAGCCACAGTGCCATCTCAAATGGGAAGCATGCTGTGAAGAAGAATGGATGA 3636 41.42 MAVVALPFSARHRPPIIYKPTPTPTSILKNSLISTSTPKSSFSVFAQSHQSQSINSVSQLSLLEEICKLCEAGDLNGALDFLQRAWKNNADHDLVQRKEAMGVLLQKCGQHKNVEIGRKLDEMLCVSFQFSGDFVLNTRLITMYSVCGYPSDSRLVFDRLQNKNLFQWNALVSAYARNELYDEAIHTFIELISVTEFQPDNFTLPCMIKACTGKCDVHLGQSVHGMAVKMGLIMDLFVGNAMISLYGKCGFVDEAIKVFDKMPERNLISWNSLICGFSENGFWLEAYGAFRSLLDGGDGFIPDVATMVTLLPVCSGEGDVDMGMVVHGMAVKLGLVHELMVCNALVDMYSKCGCLSQAAILFRKIENKNVVSWNSMIGAYSREGFVYETFELLRKMWMEEEIMEVNEVTILNLLPACLEETELLSLRALHGYSFRYSFQYDELINNAFIAAYAKCGSLISAEHVFFGMNTKSVSSWNAITGGFAQNGDPRKALDFYFQMTRSGFLPDEYSIVSLLLACARLGHLQYGKEIHGFVLRNGLEMDSFVAVSLLSLYIHCSKPSSARIYFERMGDKNLVSWNAMLSGYSQNELPNEALSLFRQMLPEGHEPNEIAIVSILGACSQLSALGLGKEVHCFVLKNYLIEDNFVACSLMDMYAKSGCLGQSRQIFNELNEKEVASWNVMITGFGVHGQGNKAVELFEEMQRSGKQPDRFTFLGVLQACCHAGLVSEGLYYLAQMQSLYKLEPELEHYACVINMLGRAGRLNEALNLINEMPEEPDAKIWSSLLSSSRIYGDLEMGEKFAEKLLALEANKADSYVSLSNLYATAGKWDHVRMVRQKMKDLSLQKDAGCSWIELRGKIYSFIASENSNPSSDEIQKMWNRLEKQIVEIGYTPDSSCVLHELEEVEKIKILKGHSEKLAISFGFLKTKEGTTLRISKNLRICRDCHNAAKFISLARKFCCTVISFFHNSKFRRLFLISFAVRKILKSGMPSSASAPASPPSASHSQNSATQPSPRKHLAEAATNNDGLFNAEEKKPDLSDQFEYALFFFFLSIFDLKLKLGKFIDYVRFFPLIFCETKLNMKFCTPYYAFSFRSEEDETIRTNVDGYHQWKTKFERDFDNFNSSEKYKKYESDYAQRLMAKYFSKKNLYGGNIFEENTTIDDEIIKSSKWPCTRSFADPLQGFEDHRSSCSTSAMESHSAISNGKHAVKKNG 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28672573 28678722 + ClCG06G015350.2 Cla06g01516 275708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01516 1211 Gene3D Tetratricopeptide repeat domain 217 323 IPR011990 GO:0005515
Cla06g01516 1211 Gene3D Tetratricopeptide repeat domain 426 531 IPR011990 GO:0005515
Cla06g01516 1211 Gene3D Tetratricopeptide repeat domain 324 425 IPR011990 GO:0005515
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Cla06g01516 1211 TIGRFAM PPR: pentatricopeptide repeat domain 240 266 IPR002885 -
Cla06g01516 1211 TIGRFAM PPR: pentatricopeptide repeat domain 575 609 IPR002885 -
Cla06g01516 1211 TIGRFAM PPR: pentatricopeptide repeat domain 749 774 IPR002885 -
Cla06g01516 1211 TIGRFAM PPR: pentatricopeptide repeat domain 677 709 IPR002885 -
Cla06g01516 1211 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Cla06g01516 1211 TIGRFAM PPR: pentatricopeptide repeat domain 371 399 IPR002885 -
Cla06g01516 1211 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 358 568 - -
Cla06g01516 1211 Gene3D Tetratricopeptide repeat domain 532 634 IPR011990 GO:0005515
Cla06g01516 1211 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 429 912 - -
Cla06g01516 1211 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 66 417 - -
Cla06g01516 1211 Pfam E motif 791 853 IPR046848 -
Cla06g01516 1211 Pfam PPR repeat family 674 722 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat family 572 619 IPR002885 -
Cla06g01516 1211 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 196 519 - -
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Cla06g01516 1211 Gene3D Tetratricopeptide repeat domain 59 216 IPR011990 GO:0005515
Cla06g01516 1211 Gene3D Tetratricopeptide repeat domain 646 884 IPR011990 GO:0005515
Cla06g01516 1211 Pfam PPR repeat 749 774 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 268 294 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 446 470 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 240 266 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 342 370 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 475 504 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 168 192 IPR002885 -
Cla06g01516 1211 Pfam PPR repeat 371 397 IPR002885 -
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 775 IPR002885 -
Cla06g01516 1211 PANTHER OS01G0913400 PROTEIN-RELATED 358 568 - -
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 199 IPR002885 -
Cla06g01516 1211 Pfam DYW family of nucleic acid deaminases 889 955 IPR032867 GO:0008270
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Cla06g01516 1211 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 399 IPR002885 -
Cla06g01516 1211 MobiDBLite consensus disorder prediction 991 1016 - -
Cla06g01516 1211 PANTHER OS01G0913400 PROTEIN-RELATED 429 912 - -
Cla06g01516 1211 PANTHER OS01G0913400 PROTEIN-RELATED 66 417 - -
Cla06g01516 1211 PANTHER OS01G0913400 PROTEIN-RELATED 196 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01516 - - - csv:101211493 1662.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02250 Cla-Chr2:37592426 Cla06g01516 Cla-Chr6:28672573 5.22E-71 dispersed
Cla06g01516 Cla-Chr6:28672573 Cla05g00861 Cla-Chr5:8519771 0 dispersed
Cla06g01516 Cla-Chr6:28672573 Cla09g00659 Cla-Chr9:6258153 3.12E-168 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011822 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01516 Cla_Chr06 FPKM 1.780499 1.613578 0.552875 0.4008 6.321868 6.935178 7.990411 0.0 0.0 0.0