Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01517 ACCAAAAAGCTTCCACATCCAGCCGCGAGATACTCAACCGAAAGTAATTCACTGTTAGCTGCCATGAAAATCCGATCGGTGAAGCTCCGAGAAGCCCACAAAGCCGCCAGCAATGGCAAAGCTTCCTTCTGCTCCGTCCTCTGGGACCAACAAGCCTACCATATTGTCACTGCTTCCTCTTCCGAATCCGCCATATCCATCCACGATTCTCTTCTTCCTTCCACTACTCCGAAAATCATTCATCATCATCGTGAAGGGGTCACCGCGCTGGCTCTTAGCCCTAATTCTACGTGTCTCGCTTCTGGATCCATGGATCGATCCGTCAAGCTCTACAAGTTTCCCGGGGGAGAATTTGAGACCAATATCACAAGATTTACGCTGCCAATTCGCATCCTTGGGTTTAATAAATCCGGAAGCCTCTTGGCAGCTGCTGGAGACGATGACGGTATTAAGCTAATTAACACAGTCGATGGTTCAATTGCGAGAGTTTTGAAAGGTCATAAAGGAGCCGTTACTGGGCTGGCGTTTGACCCCAATAGTGAATACTTAGCGTCTGTGGATTCAATTGGAACTGTAATTTTATGGGAACTTCAATCTGGAAGTATAATACACAACCTCAAAGGCATAGCTCCACACACAGGTTCGGACCCTTCCGTTATGAATGTTTTAAGCTGGAGCCCTGACGGAGAGACGTTAGCAGTCCCAGGTTTAAGAAATGATGTTGTGATGTATGATAGAGATACTGCTGAAAAACTGTTTGCATTGAGGGGGGATCACACTCAGCCGATTTGTTTCCTGTCATGGTCACCAAATGGCAAATACATGGCTACTTCTTCCTTGGATAGGCAAATTCTGATATGGGATGTTGACCAGAAGTTGGATATTGATAGACAAAAATTTGATGAAAGAATATGTTGCATGGCTTGGAAGCCAATTGGCAATGCCTTGGCGGTTATTGATGTCATGGGTAAGTATGGGGTATGGGAATCAGTTGTTCCATCTTCTATGAAATCTCCAACTGAAGATATCCCAAAATTGCAATCAAGGAATAGCAATGGCTTGCTCTTGTTTGATGAAGAGGATGAGGAGCCTAGTGCACATGGCAATTCGAGTGACCTTGGAGAAGATAGTCATTATGAATCTGAAATTCCAACTCGAAAAAGGTTGCGTAAACATTCAACAAATGAAGAAATCATGGATGAGGCCGACAGTGAAGATTTTAGCTTGCTCCTAAAGTTGGACTCCCGTAAAACATCACATCGAGTTAAAAGGGATAAACCAGATAACATTGACGAGGGAGCTATAGGCATTGCAACATATAGCAGATTGAAACAACAAGAGGCATTTCAACCAGGAGCAACTCCTTTGCAGCCAGGAAAGAAACGCTTTCTGTGTTACAATATGCTTGGAAGTATAACAACTTTTGAACATGATGGGTACTCCCACATAGAGACAGATTTTCATGACACTGGAAGTGGCCCACGAGTTCCTTCAATGAATGACCATTTTGGTTTTACGATGGCTGCACTGGATGAGAATGGTAGTGTCTTTGCAAACCCTTGTAAGGGTGAGAAGAATACAAGCACTCTAATGTATCGCCCGTTTGGTAGCTGGGCAAATAACAGCGAGTGGTCTATGAGATTTGATGGAGAAGAAGTTAAGGTTGTCGCAATTGGTAGCAAATGGGTGGCTGCATTTACCAGCCTTAATTATCTTCGCATCTTCACAGATGGCGGTTTACAGAAACATATTCTTTCCCTTGATGGGCCAGTGGTGACTGCATCTGGCTTCAAGGATGAACTTGCATTTGTGACTCATTCTTCAACCTGTCTTCCCTCAAACGACCAGATGCTAGAGTTCCGAATATTAAACATCTCTAATGGAACACAGCTCTTAAGAGGACGTTTGCCATTAACTCCAGGCTCACATCTCACATGGTTTGGATTTAGTGAAGGAGGAAAATTGAGTTCATACGATTCCAAGGGTGTACTCAGAGTGTTTACAAGTCAATATGGTGGCAGTTGGGTACCATTATTCAGTGCCAGTAAAGAGAGAAAGTCGGATGAAAACTATTGGGTGGCTGGGTTGAACGCTAACAAGTTGTTCTGTGTGATATGCAAAAATCCTGACTCATACCCACAGGTGACACCTAAACCTGTTCTTACTCTGCTAAACCTTTCGTTTCCTCTTGCACTCTCTGACCTGGGCGCAGAAGCACTTGAGAATGAGTTTATGATGAATGATATGCATCTCAAACAGATCCATGGCAGAATGGAGGAAATGGCATTACTTGGATTGTACGACACTGAACTGGATGATGAGGCATTCAGTATTGAAGCTGCTCAAGACAGATGCATCTTAAGGCTCATTGCTTCCTGCTGCAACGGTGATAAGCTTGTCAGGGCTACCGAACTCGTAAAACTTCTGTCGCTGGAGAAATCAGTCAAGGGTGCAATTAAGCTAGTTACTGCTTTGAAACTTCCTAACTTGGCCGAACGTTTCAATGCTATACTAGAGGAAAGGATGCTTAGTGAAACCAAAGGGACTCTAGAAACCACCCTTTCAAGACCTAACTGCAATGGATCTGTCTTACCTAATGCTCCAACCAGCAATACACTAAATTCTGCAGTAAAAGCCAAAACTTCAGAAGTTACTCTCCCATCCTCACCTAAAGGTCCAATACTCTCTGCACCTTTGTTTACAAAGAAACTCAAGTCTGAAGGAGCAAAGTTCAATTCTGAAAAAACAGAAGATAAGCAAACTTCAGGGGTAAATGAGACATCAAAAATGCACAACACAAATGTAGCAGATGCAAAGAAAGCAGTGTCATTGAGTAAGGTAGAGTCCAACATTGAAACCAACCAACATTTCAAGTCCTCTAATAATCAGAAGGTGAAGCCAGGACCTGTAAATCAAGTTCCATGTAATCGCCCCTCAAATCCGTTCTTGAAGTCATCAATCAAGTAA 2967 43.31 TKKLPHPAARYSTESNSLLAAMKIRSVKLREAHKAASNGKASFCSVLWDQQAYHIVTASSSESAISIHDSLLPSTTPKIIHHHREGVTALALSPNSTCLASGSMDRSVKLYKFPGGEFETNITRFTLPIRILGFNKSGSLLAAAGDDDGIKLINTVDGSIARVLKGHKGAVTGLAFDPNSEYLASVDSIGTVILWELQSGSIIHNLKGIAPHTGSDPSVMNVLSWSPDGETLAVPGLRNDVVMYDRDTAEKLFALRGDHTQPICFLSWSPNGKYMATSSLDRQILIWDVDQKLDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSPTEDIPKLQSRNSNGLLLFDEEDEEPSAHGNSSDLGEDSHYESEIPTRKRLRKHSTNEEIMDEADSEDFSLLLKLDSRKTSHRVKRDKPDNIDEGAIGIATYSRLKQQEAFQPGATPLQPGKKRFLCYNMLGSITTFEHDGYSHIETDFHDTGSGPRVPSMNDHFGFTMAALDENGSVFANPCKGEKNTSTLMYRPFGSWANNSEWSMRFDGEEVKVVAIGSKWVAAFTSLNYLRIFTDGGLQKHILSLDGPVVTASGFKDELAFVTHSSTCLPSNDQMLEFRILNISNGTQLLRGRLPLTPGSHLTWFGFSEGGKLSSYDSKGVLRVFTSQYGGSWVPLFSASKERKSDENYWVAGLNANKLFCVICKNPDSYPQVTPKPVLTLLNLSFPLALSDLGAEALENEFMMNDMHLKQIHGRMEEMALLGLYDTELDDEAFSIEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSVKGAIKLVTALKLPNLAERFNAILEERMLSETKGTLETTLSRPNCNGSVLPNAPTSNTLNSAVKAKTSEVTLPSSPKGPILSAPLFTKKLKSEGAKFNSEKTEDKQTSGVNETSKMHNTNVADAKKAVSLSKVESNIETNQHFKSSNNQKVKPGPVNQVPCNRPSNPFLKSSIK 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28680595 28685665 - ClCG06G015370.1 Cla06g01517 275709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01517 988 Gene3D - 11 217 IPR015943 GO:0005515
Cla06g01517 988 Pfam Anaphase-promoting complex subunit 4 WD40 domain 223 310 IPR024977 -
Cla06g01517 988 SUPERFAMILY WD40 repeat-like 45 328 IPR036322 GO:0005515
Cla06g01517 988 MobiDBLite consensus disorder prediction 908 988 - -
Cla06g01517 988 MobiDBLite consensus disorder prediction 908 924 - -
Cla06g01517 988 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 22 972 - -
Cla06g01517 988 Pfam Minichromosome loss protein, Mcl1, middle region 448 730 IPR022100 -
Cla06g01517 988 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 201 - -
Cla06g01517 988 CDD WD40 83 318 - -
Cla06g01517 988 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
Cla06g01517 988 SMART WD40_4 157 196 IPR001680 GO:0005515
Cla06g01517 988 SMART WD40_4 248 288 IPR001680 GO:0005515
Cla06g01517 988 SMART WD40_4 115 154 IPR001680 GO:0005515
Cla06g01517 988 SMART WD40_4 23 69 IPR001680 GO:0005515
Cla06g01517 988 SMART WD40_4 73 112 IPR001680 GO:0005515
Cla06g01517 988 SMART WD40_4 199 245 IPR001680 GO:0005515
Cla06g01517 988 ProSiteProfiles Trp-Asp (WD) repeats profile. 80 121 IPR001680 GO:0005515
Cla06g01517 988 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 80 112 - -
Cla06g01517 988 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Cla06g01517 988 Gene3D - 218 374 IPR015943 GO:0005515
Cla06g01517 988 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515
Cla06g01517 988 MobiDBLite consensus disorder prediction 361 397 - -
Cla06g01517 988 MobiDBLite consensus disorder prediction 946 988 - -
Cla06g01517 988 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 290 - -
Cla06g01517 988 Pfam WD domain, G-beta repeat 81 111 IPR001680 GO:0005515
Cla06g01517 988 Pfam WD domain, G-beta repeat 162 186 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01517 K11274 WDHD1, CTF4; chromosome transmission fidelity protein 4 - csv:101211738 1795.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00239 Cla-Chr5:2172090 Cla06g01517 Cla-Chr6:28680595 2.49E-10 dispersed
Cla06g01517 Cla-Chr6:28680595 Cla08g00264 Cla-Chr8:5522766 7.63E-06 dispersed
Cla06g01517 Cla-Chr6:28680595 Cla09g00656 Cla-Chr9:6239084 1.22E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010498 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01517 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.070282 0.0 0.0
Cla06g01517 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.092389 0.0 0.0