Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01522 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACCGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGGATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGCTCAGGTGTATCCATCAGGGCTTCAGAATAACAGATCAAACAACATAAGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTAGATCAAGCGTACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCTCAGGACTTTCTTAGCCCCACCACCTCCTTTATAACACGGGTCATTCATTTGAAACTTTATCAGGCAGAGAATTCTTTTGGAGATGTGAGTGGCAAGATAGTGGCTGATTTGGGTTGTGGTTGTGGTACATTAGGTGCTGCAGCTGCACTTTTGGGTGCAGAGCATGTTATCGGAATTGACATCGATCCTGAGTCTCTTGAAATAGCATCTTCAAATGCAGAGTATCTTGAGTTGGAAATGGACTTGGTTCAGTGTGATGTGAAGGACTTAGGATGGAGAGGTCAGGTTGTTGATACAATTGTAATGAATCCTCCATTTGGAACACGACGAAAGGGTGCAGATATGGAATTCCTTTCTGCAGCTTTGAAGCATGCATCCAAAGCCGTTTATTCTTTGCACAAGACCTCAACAAGAGATCATATAAAACGTGCAGCTTTGCGGGATTATGGTGCCCAAAGTGCTGAGGTTTTGTGCGAGCTTCGATACGACGTGCCCCAGCTTTACAAATTTCACAAGAGAAAAGAGATTGACATTGCTGTAGACCTCTGGCGATTTGTACCGAGAAGTCGCCGAGAAAATGGTGTCTAG 1560 49.23 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTAQVYPSGLQNNRSNNIRFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLPQDFLSPTTSFITRVIHLKLYQAENSFGDVSGKIVADLGCGCGTLGAAAALLGAEHVIGIDIDPESLEIASSNAEYLELEMDLVQCDVKDLGWRGQVVDTIVMNPPFGTRRKGADMEFLSAALKHASKAVYSLHKTSTRDHIKRAALRDYGAQSAEVLCELRYDVPQLYKFHKRKEIDIAVDLWRFVPRSRRENGV 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28771195 28775138 + ClCG06G015420.1 Cla06g01522 275714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01522 519 PANTHER BNAA03G59050D PROTEIN 341 513 - -
Cla06g01522 519 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Cla06g01522 519 CDD AdoMet_MTases 358 448 - -
Cla06g01522 519 PANTHER UNCHARACTERIZED 341 513 - -
Cla06g01522 519 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Cla06g01522 519 MobiDBLite consensus disorder prediction 81 131 - -
Cla06g01522 519 Pfam Methyltransferase small domain 355 445 IPR007848 GO:0008168
Cla06g01522 519 Gene3D Vaccinia Virus protein VP39 311 513 IPR029063 -
Cla06g01522 519 MobiDBLite consensus disorder prediction 1 26 - -
Cla06g01522 519 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 335 506 IPR029063 -
Cla06g01522 519 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 424 430 IPR002052 GO:0003676|GO:0008168|GO:0032259
Cla06g01522 519 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01522 - - - bhj:120071666 517.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01522 Cla-Chr6:28771195 Cla11g00212 Cla-Chr11:2472023 4.38E-122 dispersed
Cla06g01522 Cla-Chr6:28771195 Cla01g02256 Cla-Chr1:36494772 6.30E-33 transposed
Cla06g01522 Cla-Chr6:28771195 Cla03g00153 Cla-Chr3:1596413 5.90E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 8.1e-45 177.2
Cla01g02318 CCT 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.8e-40 160.6
Cla01g00159 . 17 104 C2C2-Dof Transcription Factor Family AT1G64620 75.8 7.3e-37 151.8
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.5e-43 172.2
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.1e-38 156.8
Cla03g00153 CCT,ECH 93 167 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.2e-37 152.1
Cla06g01588 CCT,ECH 185 536 C2C2-Dof Transcription Factor Family AT3G47500 53.4 6.1e-89 325.1
Cla01g00159 . 17 102 C2C2-Dof Transcription Factor Family AT4G24060 79.2 9.9e-39 157.9
Cla10g01453 . 212 591 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.8e-81 299.7
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.4e-39 161.0
Cla03g00153 CCT,ECH 94 167 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.7e-38 155.6
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.4e-36 151.0
Cla10g02000 CCT,ECH 117 199 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.0e-37 153.7
Cla02g01976 CCT,ECH 195 343 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.9e-37 152.1
Cla04g00818 CCT,ECH 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.3e-36 151.0
Cla06g01522 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.3 1.5e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61318 PF05175 MTS 1.20E-12 CL0063 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01522 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cla06g01522 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0