Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01522 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACCGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGGATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGCTCAGGTGTATCCATCAGGGCTTCAGAATAACAGATCAAACAACATAAGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTAGATCAAGCGTACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCTCAGGACTTTCTTAGCCCCACCACCTCCTTTATAACACGGGTCATTCATTTGAAACTTTATCAGGCAGAGAATTCTTTTGGAGATGTGAGTGGCAAGATAGTGGCTGATTTGGGTTGTGGTTGTGGTACATTAGGTGCTGCAGCTGCACTTTTGGGTGCAGAGCATGTTATCGGAATTGACATCGATCCTGAGTCTCTTGAAATAGCATCTTCAAATGCAGAGTATCTTGAGTTGGAAATGGACTTGGTTCAGTGTGATGTGAAGGACTTAGGATGGAGAGGTCAGGTTGTTGATACAATTGTAATGAATCCTCCATTTGGAACACGACGAAAGGGTGCAGATATGGAATTCCTTTCTGCAGCTTTGAAGCATGCATCCAAAGCCGTTTATTCTTTGCACAAGACCTCAACAAGAGATCATATAAAACGTGCAGCTTTGCGGGATTATGGTGCCCAAAGTGCTGAGGTTTTGTGCGAGCTTCGATACGACGTGCCCCAGCTTTACAAATTTCACAAGAGAAAAGAGATTGACATTGCTGTAGACCTCTGGCGATTTGTACCGAGAAGTCGCCGAGAAAATGGTGTCTAG 1560 49.23 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTAQVYPSGLQNNRSNNIRFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLPQDFLSPTTSFITRVIHLKLYQAENSFGDVSGKIVADLGCGCGTLGAAAALLGAEHVIGIDIDPESLEIASSNAEYLELEMDLVQCDVKDLGWRGQVVDTIVMNPPFGTRRKGADMEFLSAALKHASKAVYSLHKTSTRDHIKRAALRDYGAQSAEVLCELRYDVPQLYKFHKRKEIDIAVDLWRFVPRSRRENGV 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28771195 28775138 + ClCG06G015420.1 Cla06g01522 275714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01522 519 PANTHER BNAA03G59050D PROTEIN 341 513 - -
Cla06g01522 519 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Cla06g01522 519 CDD AdoMet_MTases 358 448 - -
Cla06g01522 519 PANTHER UNCHARACTERIZED 341 513 - -
Cla06g01522 519 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Cla06g01522 519 MobiDBLite consensus disorder prediction 81 131 - -
Cla06g01522 519 Pfam Methyltransferase small domain 355 445 IPR007848 GO:0008168
Cla06g01522 519 Gene3D Vaccinia Virus protein VP39 311 513 IPR029063 -
Cla06g01522 519 MobiDBLite consensus disorder prediction 1 26 - -
Cla06g01522 519 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 335 506 IPR029063 -
Cla06g01522 519 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 424 430 IPR002052 GO:0003676|GO:0008168|GO:0032259
Cla06g01522 519 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01522 Cla-Chr6:28771195 Cla11g00212 Cla-Chr11:2472023 4.38E-122 dispersed
Cla06g01522 Cla-Chr6:28771195 Cla01g02256 Cla-Chr1:36494772 6.30E-33 transposed
Cla06g01522 Cla-Chr6:28771195 Cla03g00153 Cla-Chr3:1596413 5.90E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61318 PF05175 MTS 1.20E-12 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01522 - - bhj:120071666 517.309