Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01530 ATGGAAGTTAATACCTACAATGATCCATTACACAAAATTCTCTTTAAATGGGAATGTTACTCGCCTCGACAGCAAAAGATTGCACTCTTAGCACTTCTGATCTTTACAGCTTTCTATTCAACTCGGGCATACGATCCATTGGATCCAAATGGAAACCTAACAATCAAATGGGATGTAGTCTCCTGGACGCCAGACGGATATGTAGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATTCACCAGGATGGACTCTAGGCTGGTCGTGGGCCAAGAAAGAAGTAATATGGTCAATGGTGGGAGCTCAGACAACGGAACAAGGAGATTGTTCCAAGTTCAAAGGAAATGTCCCTCACTGTTGCAAGAAAAGCCCAGTAGTTGTTGATTTGCTTCCTGGTGTTCCTTACAATCAACAATTCTCCAATTGCTGCAAGGGTGGAGTATTGGCATCCTGGGGACAGGATCCAGCAGGTTCGGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCCGGCACTTCAAACAAAACTGTAAAATTGCCAAAGAACTTCACTTTGCTCGGTCCAGGACCAGGATACACATGTGGACCTGCAAAGGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCCAAGAACCCAACTTGCTGTGTATCACTCTCAACTTTCTACAATGATACAATCACTTCTTGCCCAACGTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTACTGCACAAGGATGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTGTTAGAGTACACTGGCACGTAAAGATTAATTACAAGGATTACTGGCGCGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGTTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTCATGAAGAAGGACAAGGATACCTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCGCCAGAATCATACCCATTTCTACCCAACTCTGCGCCTGGAGGCTCCGGTGCAGTTACCAAATTAACCACCTCCTTGCTTTTGATACTCTGGTTTTTGTGGTGA 1371 43.91 MEVNTYNDPLHKILFKWECYSPRQQKIALLALLIFTAFYSTRAYDPLDPNGNLTIKWDVVSWTPDGYVAVVTMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKSPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPAGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPGGSGAVTKLTTSLLLILWFLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28863541 28865926 + ClCG06G015510.2 Cla06g01530 275722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01530 456 PANTHER COBRA-LIKE PROTEIN 28 454 - -
Cla06g01530 456 PANTHER PROTEIN COBRA 28 454 IPR006918 GO:0010215|GO:0031225
Cla06g01530 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215|GO:0031225
Cla06g01530 456 PIRSF COBRA 15 456 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01523 Cla-Chr5:25005293 Cla06g01530 Cla-Chr6:28863541 4.31E-37 dispersed
Cla06g01530 Cla-Chr6:28863541 Cla07g01519 Cla-Chr7:32372088 0 dispersed
Cla06g01530 Cla-Chr6:28863541 Cla06g01531 Cla-Chr6:28866176 0 tandem
Cla04g01143 Cla-Chr4:26624996 Cla06g01530 Cla-Chr6:28863541 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01530 - - cmo:103494059 922.539