Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01531 ATGAGGTCTCGGCGTTTCGCTTCCACCGGATCCGTCGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCCGGCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTTAGACTTCCTAAAAACTTCACGCTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGAGTAAGTGTTTCTGTCTGGGACTTTATAAATTGAGTTGGTTGTCGAATGGGCATAGACTTGGTATCCGACTGAATGCAATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTGGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCAACAATGCACCCTTGGTTCAGTGCACCAGCCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTTAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCACCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTACAAGTCATTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAAGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTCATGACCATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1446 43.85 MRSRRFASTGSVADLTGLAVLLIFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPGNAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALSKCFCLGLYKLSWLSNGHRLGIRLNAMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGNNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLMTILISLALLLNFAQ 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28866176 28869546 - ClCG06G015520.2 Cla06g01531 275723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01531 481 PIRSF COBRA 223 481 IPR006918 GO:0010215|GO:0031225
Cla06g01531 481 PIRSF COBRA 9 227 IPR006918 GO:0010215|GO:0031225
Cla06g01531 481 Pfam COBRA-like protein 60 249 IPR006918 GO:0010215|GO:0031225
Cla06g01531 481 PANTHER PROTEIN COBRA 11 214 IPR006918 GO:0010215|GO:0031225
Cla06g01531 481 PANTHER PROTEIN COBRA 238 477 IPR006918 GO:0010215|GO:0031225
Cla06g01531 481 PANTHER COBRA-LIKE PROTEIN 11 214 - -
Cla06g01531 481 PANTHER COBRA-LIKE PROTEIN 238 477 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01143 Cla06g01531 CCT
Cla04g01143 Cla06g01531 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01018 Cla-Chr5:10359437 Cla06g01531 Cla-Chr6:28866176 4.59E-166 dispersed
Cla06g01531 Cla-Chr6:28866176 Cla07g01518 Cla-Chr7:32368428 0 dispersed
Cla06g01530 Cla-Chr6:28863541 Cla06g01531 Cla-Chr6:28866176 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01531 - - csv:101213424 889.797