Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01532 ATGCCCCCATTACCGTATCTGCAACTTCGAAGCCTTTTTCTTCGATCTCTATCATCATATTCTTCCAATTCCTTGAACGATTCTGCGAGGACCGTTCTTTTACATCGAAATTTGACGTCTCTCTCCCACCATTTTCGGCATCATGGGGCAGCATTGAGGTTTTCTTCTCCCTTGCATCTCTCACTTTCTCATTCGTTCTTTTCCGAATCCGGCGACAATGACGTGGATCAAACATCACAGTCACTTGCATCCGAGCTTCTCAAAGACCCTGATTTGGATCCTCTTCCCATTACGCAGCGCCTTCAACTCAGTTTTTCCCATGTTAAGCCGAATCCGGAGTTAGTTCTCAATACACTCAATCTGTCATCGGAAGCTGGCCGGACGGTGTTAGGGTTTAATGAGTGGTTAGTATCAAATCCTGATTTTCATCACACGGATGAAACTATCTCGTATTTTGTTGATTATTTTGGTCGTAGAAAGGATTTCAATGCGGTTCATGAAGTTCTTGCGAAAGGTGTAGGGATCAGTGGGGCTAAAACCCTGCAGTCGTCTATTGATCGGTTCGCTCGTGCTGGGCGATCCACAAAGTTGATCTCATTTTTTGAGACAATGGAGAAGAATTATGGGCTTAAGAGGGATAAAGAGTCGCTTAGAATGGTGGTGGAGAAGCTTTGTGAACATGGCTTTGCGAGCCATGCAGAAAAGATGGTCAAAGACTTGGCGAACGAATTTTTCCCTGACGAAACAATATGCGATACTCTGATCAAAGGATGGTGCGTTGATGAGAAACTTGATGAAGCAAAAAGGCTGGCGGGTGAGATGTACAGGGGCGGGTTTGAGTTAGGGGCAACGGCATATAATGCTCTGCTTGACTGTGTTTGCAAACTTTGTAGGAAAAAGGATCCGTTTAGACTTCATTCTGAAGCTGAGGAAATTCTGGTGGAAATGGATTATCGTGGGGTTCCACGAAATGTGGAAACTTTCAATGTGCTGATCAATAATTTGTGCAAGATTAGGAAAACGAGTGATGCAGTTAATTTGTTTCATCGAATGCGGGAGTGGGGATGTCATCCCAATGCTGAAACGTTCCTTATTTTGATTAGAAGTTTGTATCAAGCTGCAAGGACAGGAGAGGGGGATGAAATGATTGACAGGATGAGGTCTGCAGGATGTGGTGATGCACTCGATAAGAAGGCTTATTATGAGTTTCTGAAGATTTTGTGTGGGATTGAGAGGATTGATCATGCTCTGATTGTTTTTGCAAAGATGAAGAAGGACGGGTGTGAACCTGGGATTAAGACATATGACCTATTGATGGGAAAATTATGTGCTCATAATCGTCTGGACAAAGCAAATTCACTCTTTAATGAAGCTCAAAAACGAGGAGTGCCAGTTACTCCAAAAGCATATCAGGTGGATCCAAGATATGCAAAGAAGGCAAAGGTAAAGAAGGTTGAGAAGAAGAGGGAGACATTGCCGGAGAAAATGGCCAGAAAGAGGCGACGACTGAAACAAATCCGTTTGAGTTTTGTCAAGAAACCGAAGAAAGCAATGCGTAGAGCATTTTGA 1569 43.47 MPPLPYLQLRSLFLRSLSSYSSNSLNDSARTVLLHRNLTSLSHHFRHHGAALRFSSPLHLSLSHSFFSESGDNDVDQTSQSLASELLKDPDLDPLPITQRLQLSFSHVKPNPELVLNTLNLSSEAGRTVLGFNEWLVSNPDFHHTDETISYFVDYFGRRKDFNAVHEVLAKGVGISGAKTLQSSIDRFARAGRSTKLISFFETMEKNYGLKRDKESLRMVVEKLCEHGFASHAEKMVKDLANEFFPDETICDTLIKGWCVDEKLDEAKRLAGEMYRGGFELGATAYNALLDCVCKLCRKKDPFRLHSEAEEILVEMDYRGVPRNVETFNVLINNLCKIRKTSDAVNLFHRMREWGCHPNAETFLILIRSLYQAARTGEGDEMIDRMRSAGCGDALDKKAYYEFLKILCGIERIDHALIVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPRYAKKAKVKKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKKAMRRAF 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28875341 28876909 - ClCG06G015530.1 Cla06g01532 275724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01532 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Cla06g01532 522 Pfam Pentatricopeptide repeat domain 414 440 IPR002885 -
Cla06g01532 522 Gene3D Tetratricopeptide repeat domain 300 391 IPR011990 GO:0005515
Cla06g01532 522 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 43 521 - -
Cla06g01532 522 Pfam PPR repeat family 324 370 IPR002885 -
Cla06g01532 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Cla06g01532 522 PANTHER ATPASE EXPRESSION PROTEIN 3 43 521 - -
Cla06g01532 522 Gene3D Tetratricopeptide repeat domain 392 518 IPR011990 GO:0005515
Cla06g01532 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cla06g01532 522 Pfam PPR repeat 252 278 IPR002885 -
Cla06g01532 522 Gene3D Tetratricopeptide repeat domain 145 299 IPR011990 GO:0005515
Cla06g01532 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cla06g01532 522 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Cla06g01532 522 TIGRFAM PPR: pentatricopeptide repeat domain 434 465 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01399 Cla06g01532 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01532 Cla-Chr6:28875341 Cla06g01576 Cla-Chr6:29319586 2.99E-42 dispersed
Cla06g01532 Cla-Chr6:28875341 Cla01g01399 Cla-Chr1:28423998 3.70E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01532 - - csv:101213658 910.212