Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01537 ATGGCGAACGCACCAACCGCTGGCGGAATATCAAAGATTTTGTCTAATCCATCCCCGGACTCCCCCTCCGATGTCCCGGACGTTGTGGTTCAGGTCATCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACGGCAAACGATGGGGATATGAAGCTTAAAGCTATTCTTCCATCAAACCTGACGTCTGATGTCATTTCTGGAAACATTCAAAATTTGGGTCTTATTCGCATTCTTGACTACTCTCTCAATGACATTCCGAACAAACCAGAAAAGTATTTAATCGTGACGAAATGCGAGGTGGTTTCTCCTGCTCTGGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAGCAGGTATTATTTTGAAACCGAAGCTAGAGGTTGATGATAAGAGCATATTTAACAATGGATCCGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACGAATATGGCACCAGCTGCACGGATGTCCATGACAAGGCGAGTTCATCCACTTGTCTACTTAAATCCTTACCAGGGAGATTGGACCATCAAAGTCCGTGTTACGGATAAGGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGATGCTGCAAAGAAGTTCTATGAGAAGTTTTCCCTTGGCAAAGTTTACTACATTTCCAGGGGAACTTTGAAAGTTGCTAATAAGAAATTCAAGACAGTTCAAAATGATTATGAAATGACTTTAAATGTGAATTCTCAAGTAGACGAGGTTAGCAATGAAGCTCCGTTCGTTCCTGAAACTAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGGGATCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCTCCTACAATGAGCATTCGAAGGAAAATCAACAACGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTATGGAATGATCTTGCGACCACTGTGGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCTATAATTGCAGTGAAGTATCTTAGAGCTGGAGACTTTCAAGGTGTATCTTTGTCGACGATAAGCAGGAGCTCAATTATAATAAATCCAGACATAAAGGAAGCACATGATTTGAGATCCTGGTATGACTCTGAAGGAAAAGCCGTATCTATGTCTTCTGTTAGCTCTGGCCTGAGCCCATCAACCAAGAGTGGGGCTAGGTCCATGTATTCTGACCGGATCTCCCTATCTCATATACTCCAAAACAAAACTTTGGGAGAAGAAAAGCTTTCTATGCCAATAGAATTACTAGTCAGCAAGAATAACATGAAGTTATTGTCTCCACAGCCCATATTCTTCAGCATTAGAGCATATGTTAGCTTTATCAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAAACATGCAACAAGAAGGTGACTGAAGCCATTGGGTCTGGATATTGGTGCGAAAATTGTCAGAAAAACGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATCATTGGATGCTCTGCCGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATGCATATCAACTGAAACTCAAAGAAGCCACTTGGGTTCCCCATTTATTTCGAGTTAGTGTTTCTCAAAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCAGTTGCTCCAGTTGACTTTGCTGCTGAATCCAGATTTTTGCTAGAAGAGATAGCAAAGATGAAAGCTTCCTAA 1932 41.51 MANAPTAGGISKILSNPSPDSPSDVPDVVVQVIDLKATGNRYMFTANDGDMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKPEKYLIVTKCEVVSPALEKEVKTEVKKEEAGIILKPKLEVDDKSIFNNGSGILLKPKQELVAKSAAQIVHEQRTNMAPAARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAAKKFYEKFSLGKVYYISRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAPFVPETKYNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIAVKYLRAGDFQGVSLSTISRSSIIINPDIKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGARSMYSDRISLSHILQNKTLGEEKLSMPIELLVSKNNMKLLSPQPIFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCENCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENAYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28963821 28967228 - ClCG06G015600.1 Cla06g01537 275729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01537 643 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Cla06g01537 643 SUPERFAMILY Nucleic acid-binding proteins 481 640 IPR012340 -
Cla06g01537 643 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 639 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cla06g01537 643 CDD RPA1_DBD_B 312 418 - -
Cla06g01537 643 MobiDBLite consensus disorder prediction 1 25 - -
Cla06g01537 643 Gene3D - 174 282 IPR012340 -
Cla06g01537 643 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Cla06g01537 643 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 7 638 - -
Cla06g01537 643 Gene3D - 437 640 IPR012340 -
Cla06g01537 643 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Cla06g01537 643 Gene3D - 6 112 IPR012340 -
Cla06g01537 643 CDD RPA1_DBD_C 482 639 IPR013955 -
Cla06g01537 643 Pfam Replication protein A OB domain 308 404 IPR031657 -
Cla06g01537 643 Coils Coil 558 578 - -
Cla06g01537 643 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cla06g01537 643 SUPERFAMILY Nucleic acid-binding proteins 178 285 IPR012340 -
Cla06g01537 643 Pfam Replication factor-A C terminal domain 487 633 IPR013955 -
Cla06g01537 643 CDD RPA1_DBD_A 179 282 - -
Cla06g01537 643 Gene3D - 290 431 IPR012340 -
Cla06g01537 643 PANTHER REPLICATION FACTOR A 1, RFA1 7 638 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01537 Cla-Chr6:28963821 Cla11g00142 Cla-Chr11:1729656 6.40E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01537 K07466 - csv:101208545 1119.76