Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01538 ATGGGAGGCGGTAATCTTCAGACTCCATCTGACTCGAAAACTGAAGAGTGGTGCCTGAGGAATACGGGCGAAGTTGGTCTTTCTATTCCAAGCAAAAAATTAGTCTCTTCCTTATCCTCAGCATCTGATTCCTCCTCTGACAGCTCCTTTGAATTGGTTGTAACTGGGCCCGGCAATTTCATTGGTGGTACAAGTGACCCTCCGAAAAAGGATGAGTTGCATGTTGTAGGACACTCAGACTCTGAATTTGAGTTTATTAATAGTGATGATATTGCGACTCATTCTCCAAGGGCTGATCTTCCTGGTGCACCCAAAATATCAAGCCGCTCATTATCACGGTCGTCATCATCCGCATCTGAATCTTCCCTGCACGATCATGTGATTGAACTCCCAAAGCCTGGAAAGCACAAAGATACCAATGGCATGGAGCCAGATTTGAATAAAACATTACCAGGTCCTGAACCTGGTGAAACCAGTAATGTTGAAAGTAGAAAAAATCCACAAACTTGTCCTTCCACCTCATCGTCCGAATCTGAAAATGAACCTAAAATTAAACTTCAAAAGGGTGGAGATGCTGCTGATAACTTACTGTCAAAAAATACTCGCTCTCGAAGCATGGAAAAGGACAACAGGTTGGTTACAGATTTCAGTGATGACGATGTTCCCATCAGCTCTATGCCTTGCAATGGGCAATCAGCAGTCTCGAGCTCAGGCAGAGAGACACCTACTCAATATCCTCCAACTCAAGTGATGGAGAGAGCTGATGATCCTACTTCCCCTGCATATAGAATTCCATCTCGTGTCTTTTCTAGAACTAAATCTACAGCACCTATGGAATGGAGTGTTGCTTCAAATGAATCATTGTTCAGCATTCAAATGGGGAACATGAGTTTTACCAGAGAACAGTTGTGTTGGCTAGGAAAATCAGGTGAGCTATGTAGGCCTGGTGAATCGCCCCTTGATGTATTCCAGCATTTCGCTATGAAAACTTCTGATTGTGGATTGAAAAGCTCCAATCCAGATGGTGATGTAGTAGCTGCAGAAACAATGAGGGACTTAAGAGAAAACTCCGAGAATCATCGCAAGGAGAGTTCGACTCTAACAGAATCGTCGTCTCAGTCAGCCAGCATTTCTCATCAGTCAGAAAGCAGCACAAAATCTTTCCAGTTTCCAATATTGACAGGAGAAGGAGGAAAGAGCATTTCATTGAAGGGAGGCGATCCAGAGAAGGCGAAGCAAGAGGGGAAACCAGAATCACCACAACCATCTTCAAATCCTCAGACCCCAAAAGAATCGAGTTCAGGCGGATCTCCAAAAGCAGCTACAAATGTGGGGCCAAAGAGATGGTTTTCTTGGTTTTCTTGCTTTTCTTGCTGCCCGTTCTGTAGTTAA 1392 44.11 MGGGNLQTPSDSKTEEWCLRNTGEVGLSIPSKKLVSSLSSASDSSSDSSFELVVTGPGNFIGGTSDPPKKDELHVVGHSDSEFEFINSDDIATHSPRADLPGAPKISSRSLSRSSSSASESSLHDHVIELPKPGKHKDTNGMEPDLNKTLPGPEPGETSNVESRKNPQTCPSTSSSESENEPKIKLQKGGDAADNLLSKNTRSRSMEKDNRLVTDFSDDDVPISSMPCNGQSAVSSSGRETPTQYPPTQVMERADDPTSPAYRIPSRVFSRTKSTAPMEWSVASNESLFSIQMGNMSFTREQLCWLGKSGELCRPGESPLDVFQHFAMKTSDCGLKSSNPDGDVVAAETMRDLRENSENHRKESSTLTESSSQSASISHQSESSTKSFQFPILTGEGGKSISLKGGDPEKAKQEGKPESPQPSSNPQTPKESSSGGSPKAATNVGPKRWFSWFSCFSCCPFCS 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28968549 28971011 - ClCG06G015610.2 Cla06g01538 275730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01538 463 MobiDBLite consensus disorder prediction 417 440 - -
Cla06g01538 463 PANTHER SMOOTHELIN-LIKE PROTEIN 1 77 463 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 34 74 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 153 180 - -
Cla06g01538 463 Coils Coil 350 370 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 86 264 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 354 444 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 107 123 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 201 216 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 224 248 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 125 143 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 34 53 - -
Cla06g01538 463 MobiDBLite consensus disorder prediction 366 391 - -
Cla06g01538 463 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 77 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01538 - - - bhj:120071920 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01538 Cla-Chr6:28968549 Cla11g00450 Cla-Chr11:5122090 2.43E-18 dispersed
Cla05g02391 Cla-Chr5:35463145 Cla06g01538 Cla-Chr6:28968549 3.10E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g666 Blo04g00791 Blo16g00165 . . . Bpe13g00315 Bma06g00149 . . . . . . Car11g00188 Sed08g0276 . . Bhi02g00094 Tan09g2043 Cmetu02g1345 . Hepe09g0274 . . Cla06g01538 Cam06g1697 Cec06g1759 Cco06g1758 Clacu06g1664 Cmu06g1610 Cre06g2423 . . . . . . . . . . Bda11g01731 Bda14g00882 . Bpe15g00579 Bma03g00852 . . . . . . . . . Cpe18g00708 . . . . . . . . . . . . . . Lsi06g01411 Csa01g00296 Chy02g02441 Cme02g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006345 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01538 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.10349 0.0 0.0