Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01542 ATGGAGATTCATTTGGAGAGAAAGACAGAGCAGAAGCTCTCTGTCTCTTCATCATCGTCGCCGTCGTCGTTATCAACTTCTTCGTCTTCGTGCTCTTCCTCTTCTTTCCACAAAAATGCATATACTTCTTCAGGACTTAGATTTATCGACTTTCTTCGTGACAATGAAAGGGAATGGAAATTGGCAGAGAAGCGGTTCGATCAGCTTTCTTGGACTAGTGCTGGCTCTGAACCGGCCGTGAAATGGTCTAATTTTCCCTTCTGTATAGGAATGTCAGAGACTCAGGAGTTTGCTTATCAACTGTTAAGGGCACTGAGAAGAAGAAAGAATTGGAAAATAGAAATCACCAAAAGTGAATTTCATATCCTTTGGTGCCAGTTGACTCATTCCAGTGTTAATTCAAGAACAACAACTCTATTTCACCTTTGTGATAGGAACATGGATGGAAGGGTAACTGAGAAAGATATCAAACAGATGATAATGTTAACTGCTTCTACCAATAAGTTATCCATGACCCAAGAAGAAGGAGAAGATTATGCTGCTTTAATCATGGAAGAGCTAGATGAAGAAAAGCAGGGCTACCTTGAGCTACCTCAATTTGAGAAGCTCTTCAAGATAAGCTCACCAGAGGCAGTCTCCCCTCTAAACAAACAATCATCAAATACACACATTCGACATCGCCATGATCCATTTCAAGAGTCCATATATGAGGCTGAAATGCTGCTTAGATCTCGATGGAGACGAGCATGGATGGTGGCGTTGTGGTTGATCATATGCCTTGCATTGTTTACCTGGAAATTCATTCAATACCGCCATCGGAAGGCGTTCGAAGTCATGGGTTACTGCCTCTCAATTGCCAAGGGGGCAGCAGAGACTTTGAAATTTAACATGGCTCTAGTCTTGCTTCCTGTTTGTCGAAACACAATTACATGGCTCCGCAGAAACTCGTCCTTGAACTCGTTAGTTGCAGGAGGCATTGTAGCAGGAGTTGTCCTTCATGGAGGAACCCATCTTGTTTGTGATTTTCCAAGAATTAGTGGTTGTGAGAAGTCAATTTTCCAGAAAACTATTGCTACTCAGTTCAACTATCATCAGCCATCATATGTTGAAATCTTGGCCACAACTGAGACTTTAACAGGCATTATTATGGTCATATTGATGGCCATTGCATTTTTGCTCGCTATGAAATGGCCACGTCGTAAATCGACCTCGCTTCCGAGGTCTATACAACAAGTCACAGGATATAATACCTTTTGGTATTCTCACCATTTGTTCATATTTGTCTATGCATTACTCATTGTTCACTCCATATTCTTATTCCTAACTGACAAAGCAACAGAAAAAACGGCAAGGACTTATTCAGGAAAAGTTTTATTTCTCAAATTGAGCAAACCAGAGAGATTCAAGTATCAAAGTGGGATGTATGTATTAATTCAATGCCCACAAATCTCCCCGTTTGAATGGCACCCATATTCATTAACTTCTGCACCACAAGATACCCATCTCAGTGTACATATCAGAAATTTGGGAGATTGGAGTTATGAGCTGTACAGCCTGTTCCATGAGGGAATATCTCCTACATCAAAAGATTACCCGAAAATATTCATTGATGGGCCCTATGGTGCTGCTTCTCAAGATCATGTCAAGTACAACCGTGTGGTACTAATCGGTCTAGGTATTGGAGCCACACCCTTCATGAGCATCCTAAAAGATGTTCTAATCAGGTTTACTAGGAAATGTGATAGTCAAGCTTACAATGGAAAAGGCAGCCAAAGTACATCCAAAACCTATCTTTATTGGGTTACAAGAGAGCAAAGCTCCTTTGATTGGTTTAAAGATTTTATGAAGGATTTAACAGGTTCTGATCAAACTCAGTTAGCTGTGGAGATGCACAATTTCCTCACTAGTATATATCATGAAGGGGATGTAAGGTCTGTTTTGATAAGAGCAATTCAAGCCTTGCATTATACTCGACGGGGCATCGACATCGTCTCGAAGACTTCGAGATGCTTTATTACAAACATGCTACCTTTTCCTGCAGCATGGAGGGAGTTTTTATGGGGAGCTATCGCTGGAGCATTTGGAGAAGGAATGATGCACCCTATTGATACCATAAAGACTCGGATTCAAAGCCAGGCTATTCTATATGGAAGTCAAAATCAAAAGAGCCTCTTGCAGATGGTTCAATCAGTATGGAAAATTGACGGATTGAGGGGCTTTTATAGGGGCATAGCTCCTGGAATTACTGGTTCACTTGCCACTGGAGCTACATACTTTGGTGTTATTGAGTCCAGTAAGAAATGGATTGAAGAAACACATCCTAGACTTGGCGGTCATTGGGCTCATTTCATTGCTGGAGCAGTTGGTGATACACTGGGTTCATTTGTGTACGTTCCATGTGAAGTTATGAAGCAACGAATGCAAGTTCAAGGCACAAGGTCGTCTTGGAGTTCCCTTCCCATGAAGGATAGTATCTCTATGAATCATGGTGGGCAAATGTATGGCTATTATTCAGGGATGTTCCAGGCTGGTCATTCAATCCTGAAGGAACAAGGATTAAGAGGATTATATGCGGGATATTGGTCTACACTTGCCAGGGATGTGCCGTTTGCTGGTCTAATGGTCATGTTTTATGAGGCGCTTAAAGATTTCACTGAGTATGGGAAGCAAAGATGGATGCCTAATTCAGATGTTAATAGCTCCTTGGAAGGACTTGTGTTGGGGGGATTAGCTGGTGGTATCAGTGCTTATCTGACGACTCCCTTGGATGTTGTAAAAACAAGAATGCAAGTTCAGGGATCAACTTTGAGGTATAACGGCTGGTTGGATGCGGTGAGAACTATCTGGCGGAGTGAAGGAACAAAGGGAATGTTTAGGGGTAGCATACCCAGAATCACATGGTATATTCCAGCTTCTGCCCTAACTTTTATGGCTGTGGAATTTCTGAGAGACCATTTCAACGAAAGATTGGATGATGAATCCAAAAAAGAAGCTGCTTCTTTATCAGGTGATAGAAAAGGAACATTGCGAGAAACGGCATTAACTGCTCGAGACTGA 3057 41.81 MEIHLERKTEQKLSVSSSSSPSSLSTSSSSCSSSSFHKNAYTSSGLRFIDFLRDNEREWKLAEKRFDQLSWTSAGSEPAVKWSNFPFCIGMSETQEFAYQLLRALRRRKNWKIEITKSEFHILWCQLTHSSVNSRTTTLFHLCDRNMDGRVTEKDIKQMIMLTASTNKLSMTQEEGEDYAALIMEELDEEKQGYLELPQFEKLFKISSPEAVSPLNKQSSNTHIRHRHDPFQESIYEAEMLLRSRWRRAWMVALWLIICLALFTWKFIQYRHRKAFEVMGYCLSIAKGAAETLKFNMALVLLPVCRNTITWLRRNSSLNSLVAGGIVAGVVLHGGTHLVCDFPRISGCEKSIFQKTIATQFNYHQPSYVEILATTETLTGIIMVILMAIAFLLAMKWPRRKSTSLPRSIQQVTGYNTFWYSHHLFIFVYALLIVHSIFLFLTDKATEKTARTYSGKVLFLKLSKPERFKYQSGMYVLIQCPQISPFEWHPYSLTSAPQDTHLSVHIRNLGDWSYELYSLFHEGISPTSKDYPKIFIDGPYGAASQDHVKYNRVVLIGLGIGATPFMSILKDVLIRFTRKCDSQAYNGKGSQSTSKTYLYWVTREQSSFDWFKDFMKDLTGSDQTQLAVEMHNFLTSIYHEGDVRSVLIRAIQALHYTRRGIDIVSKTSRCFITNMLPFPAAWREFLWGAIAGAFGEGMMHPIDTIKTRIQSQAILYGSQNQKSLLQMVQSVWKIDGLRGFYRGIAPGITGSLATGATYFGVIESSKKWIEETHPRLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTRSSWSSLPMKDSISMNHGGQMYGYYSGMFQAGHSILKEQGLRGLYAGYWSTLARDVPFAGLMVMFYEALKDFTEYGKQRWMPNSDVNSSLEGLVLGGLAGGISAYLTTPLDVVKTRMQVQGSTLRYNGWLDAVRTIWRSEGTKGMFRGSIPRITWYIPASALTFMAVEFLRDHFNERLDDESKKEAASLSGDRKGTLRETALTARD 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28998557 29013256 + ClCG06G015650.2 Cla06g01542 275734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01542 1018 Pfam FAD-binding domain 447 544 IPR013112 GO:0016491
Cla06g01542 1018 Gene3D Translation factors 442 523 - -
Cla06g01542 1018 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Cla06g01542 1018 PANTHER NADPH OXIDASE 450 668 - -
Cla06g01542 1018 PANTHER NADPH OXIDASE 30 453 - -
Cla06g01542 1018 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 438 546 IPR017927 GO:0016491
Cla06g01542 1018 MobiDBLite consensus disorder prediction 1 37 - -
Cla06g01542 1018 ProSiteProfiles Solute carrier (Solcar) repeat profile. 899 985 IPR018108 -
Cla06g01542 1018 CDD NOX_Duox_like_FAD_NADP 454 638 - -
Cla06g01542 1018 Gene3D Mitochondrial carrier domain 827 1009 IPR023395 -
Cla06g01542 1018 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 533 623 IPR039261 -
Cla06g01542 1018 Pfam Respiratory burst NADPH oxidase 43 134 IPR013623 GO:0004601|GO:0050664
Cla06g01542 1018 MobiDBLite consensus disorder prediction 12 37 - -
Cla06g01542 1018 ProSiteProfiles Solute carrier (Solcar) repeat profile. 679 768 IPR018108 -
Cla06g01542 1018 SUPERFAMILY EF-hand 55 206 IPR011992 -
Cla06g01542 1018 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Cla06g01542 1018 Gene3D - 33 152 - -
Cla06g01542 1018 Pfam Ferric reductase like transmembrane component 288 433 IPR013130 -
Cla06g01542 1018 SUPERFAMILY Mitochondrial carrier 681 982 IPR023395 -
Cla06g01542 1018 ProSiteProfiles Solute carrier (Solcar) repeat profile. 777 884 IPR018108 -
Cla06g01542 1018 MobiDBLite consensus disorder prediction 993 1018 - -
Cla06g01542 1018 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN A-LIKE 450 668 - -
Cla06g01542 1018 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN A-LIKE 30 453 - -
Cla06g01542 1018 Pfam Ferric reductase NAD binding domain 550 672 IPR013121 GO:0016491
Cla06g01542 1018 Gene3D Mitochondrial carrier domain 643 826 IPR023395 -
Cla06g01542 1018 Pfam Mitochondrial carrier protein 902 988 IPR018108 -
Cla06g01542 1018 Pfam Mitochondrial carrier protein 779 884 IPR018108 -
Cla06g01542 1018 Pfam Mitochondrial carrier protein 681 770 IPR018108 -
Cla06g01542 1018 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Cla06g01542 1018 Gene3D - 543 639 IPR039261 -
Cla06g01542 1018 SUPERFAMILY Riboflavin synthase domain-like 451 543 IPR017938 -
Cla06g01542 1018 SFLD NADPH oxidase subgroup (NOX) 55 666 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01542 K13447 RBOH; respiratory burst oxidase [EC:1.6.3.- 1.11.1.-] - csv:101217969 1097.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00100 Cla-Chr2:1131098 Cla06g01542 Cla-Chr6:28998557 3.81E-07 dispersed
Cla05g02127 Cla-Chr5:32860705 Cla06g01542 Cla-Chr6:28998557 2.65E-24 dispersed
Cla06g01542 Cla-Chr6:28998557 Cla07g00739 Cla-Chr7:20587102 0 dispersed
Cla08g00676 Cla-Chr8:19028997 Cla06g01542 Cla-Chr6:28998557 2.69E-33 dispersed
Cla10g00726 Cla-Chr10:11627665 Cla06g01542 Cla-Chr6:28998557 1.04E-19 dispersed
Cla06g01542 Cla-Chr6:28998557 Cla03g00175 Cla-Chr3:1930726 2.14E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010720 0 3 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01542 Cla_Chr06 FPKM 24.210838 26.032574 21.110624 18.642866 13.604649 12.861393 13.570493 33.48513 33.494816 35.053547