Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01546 ATGGACGAAATTACCCTCATCGTCGCCACCGTAGTTACCTTGGCCTCCGCCATCCTCCTCTACCGTGCTTTCTTCCTCCGCCGCAGATTCCGCCTCCCGCCTGGTCCAAAACCATGGCCGATCGTAGGAAACATGCCGCAAATCGGCGGAGCGCCTCTCCATTCCCTCCTCGCCACCATGGCCGGCGAGTACGGACCTCTGATGTACCTCCGATTAGGCTCCGTTGACATGGTCGTGGCGGCGTCGGCGGCAGTAGCGGAGCAACTCTTGAAGATACACGATACTAATTTCCTTAGCCGCCCGCCGAACGCCGGCGCAAAATACATTGCTTATAATTATCAGGATATGGTTTTTGCGCCGTACGGTCCACGGTGGCGATTACTCCGGAAAATCAGCGCTGTCCATCTCTTCTCCTCAAAAGCCCTAGATGATCATCGCCGCATACGCGAGGAGGAGATAGCGATGCTAGTACAGGCTCTTGCAAGGTCCGGCGAAGCTCCGGCGACCTTGGGGAGCTTGCTCACCGTGTGCACTGCGAATGCGCTCGGACGGACAATGCTCGGCCGACGGGTTTTCGGCGATGGCAGCGGCGGCAACGATCCAGAGGCGAACCGATTTAAGGAAATGGTCGAGCAAGTGATGGTGCTGGCCGGAAAGTTCAACCCCGGCGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGGTGTGGCAAGTGAGATGAAGAAGGTCCACAAATGGTTCGACGATTTTTTGACCAAGATCTTGGAGGAGCACCGGAATTTATTGGCCGCAGGCCGTGGCGGCGGCGGCGACCACCACCAAGACTTGTTGAGTACTCTTCTGTCGTCAAAGGATGAAGCTGAGGATGAGAATGAGAAACTTAATGACACTGAGATCAAGGCTTTGTTGTTGAATATGTTTACCGCTGGAACCGACACTTCAGCAAGCACAGTGGAATGGGCCTTGACAGAGCTCATCAGACATCCCAAAATGATGGCCCAGGCCCAACAAGAATTGGACTCCGCAGTGGGCCGTGATCGGGCAGTTTCCGATCTGGACTTGCCGCAACTGCCCTTTCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTACCACATCCCTAAAGGCTCCACTCTCTTGGTGGATGTATGGGCCATTGGTCGTGACCCAAAAGAATGGGCCGACCCACTTGAATTCAGGCCCAATAGGTTCCTCCCAGGCGGAGAGAAGGCCCACGCCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTTGGAGCTGGGCGGAGGATCTGCGTGGGTATGAGTATGGGCCTGAGAATGGTCCAGATGTTAACTGCCACGTTGGCCCATTCCTTTGATTGGGCCTTGCCTAATGGGCTTTGGCCAGATGAGTTAAACATGGACGAGGCCTATGGGCTGACTCTGCGTCGGGCCCAACCCTTGGTTGTGCATCCACGGCCCAGATTATTACCTGGGGTTTATCAAAAATTGCCTTAA 1563 55.66 MDEITLIVATVVTLASAILLYRAFFLRRRFRLPPGPKPWPIVGNMPQIGGAPLHSLLATMAGEYGPLMYLRLGSVDMVVAASAAVAEQLLKIHDTNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDHRRIREEEIAMLVQALARSGEAPATLGSLLTVCTANALGRTMLGRRVFGDGSGGNDPEANRFKEMVEQVMVLAGKFNPGDFFPSLEWLDLLGVASEMKKVHKWFDDFLTKILEEHRNLLAAGRGGGGDHHQDLLSTLLSSKDEAEDENEKLNDTEIKALLLNMFTAGTDTSASTVEWALTELIRHPKMMAQAQQELDSAVGRDRAVSDLDLPQLPFLQAVVKETFRLHPPTPLSLPRMAAESCEINGYHIPKGSTLLVDVWAIGRDPKEWADPLEFRPNRFLPGGEKAHADVKGNDFEVIPFGAGRRICVGMSMGLRMVQMLTATLAHSFDWALPNGLWPDELNMDEAYGLTLRRAQPLVVHPRPRLLPGVYQKLP 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29033908 29038597 - ClCG06G015700.1 Cla06g01546 275738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01546 520 PANTHER FLAVONOID 3'-MONOOXYGENASE 10 508 - -
Cla06g01546 520 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 10 508 - -
Cla06g01546 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Cla06g01546 520 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 SUPERFAMILY Cytochrome P450 33 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 Coils Coil 278 301 - -
Cla06g01546 520 Pfam Cytochrome P450 33 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 Gene3D Cytochrome P450 26 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla06g01546 520 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01546 Cla-Chr6:29033908 Cla07g01383 Cla-Chr7:30965710 2.89E-138 dispersed
Cla09g01651 Cla-Chr9:33018725 Cla06g01546 Cla-Chr6:29033908 3.63E-61 dispersed
Cla06g01546 Cla-Chr6:29033908 Cla01g01960 Cla-Chr1:34243021 1.98E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01546 K05280 - csv:101207160 865.144