Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01547 ATGGCCAAATCGGCGCTGGAGACTTACGGCCACGACCTCGTCGACAAAGCAGAAAACCAAAAACTCGATCCCGTCTTCGGCCGCCACCAAGAAATCCGCCGTCTCCTCACCATTATCTGCCGTAAAACCAAAAGCAATCCCATGTTAATCGGCGAGCCTGGCGTCGGAAAAACCGCCGTCGTCGAAGGACTCGCACAGAAAATCGCCTCCGGAAATAATCGTGAGCTGGACATGGGAGCCTTAATCGCAGGAACAGAATACAGAGGGCAATTCGAAGAGAGACTGAAAAACGTGATGAAGGAAGTGCAAGATTCGGAAGGGAAAGTGGTATTGTTCATCGATGAAATTCATTTGGTGGTCCGAAATGGCGGAACCGCCGCCGACATTCTGAAACCGGCACTGGGGAGAGGGAATTTCCGGTGCATCGGAGCGACGACGTTGAAGGAATATAAAAGGTATATTGAGAAGGATACGGCATTAGCGAGGAGATTTAAACAAGTTTATGTAAATGAGCCAAGCGTTGAAGAGTCCATTAGCATTCTTAGAGTGTTGAAGGAGAGATATGAAAATCATCATGCTCTTGAAATTAAAGACACTGCTCTTGTTGCTGCTGCCAAACTGTCTCATCGCTACATCACAGGGCGACAACTCCCCGATAAAGCAATCGATCTAGTTGATGAAGCAAGTGCATGCTTGAGAGTTCAACTCGACACTCAACCTGAAGAAATTCTGGAACTCGAAAGTAAAAGGGCAAAGTTTGAAGTTGAAGTCAATGCACTTGAAAAAGAGGATGACAAAGCAAGCCAAGCCCGTCTTCCTCAAGCGAAAAAAGAGCTCGATGAGTTGAATAACGAGCTGCAGCAATTGTTAACAAAACATCGCAAACAGAAATCCGAAATGGATAAATTAATGAAATTGAAGCAAAAGAAAGAAGAAATATTAATTCAGATAGAAGCAGCCCAAAAACGGCAAGATTTAATCAGAGTCGCTGATCTCCGACGGCAGAAATTAGAGGAAGTAGACTTGAAAATTGATGAGGTTGAAAGGAGGATAAAAAAGCAAAGCTTTATAGTGAAGGACACGGTTGGACCGGAGGAAATAGCGGATGAGGTGAGCCGTTGGACTGGGGTTCCGGTTTCGAGGCTGACCGGGAAAGAGAAGGAGTGGGTTATGGGTTTGGACAGGCGGCTGCAGAAAAGAGTCATAGGACAAAATGAAGCAGTTAATTCAATAGCTGAAGCAGTGATGAGGTTCAGAGCTGGGCTCGGAAGGCCGAACCAACCTAATGGTTCGTTTTTGTTTTTGGGCCCGTCTGGGGTTGGGAAAACAGAGCTAGCCAAGGCTCTGGCTCAAGAGCTTTTTAATGACGAGAATCGTATGGTGCGAATTGATATGTCGCAGTACATGGAGAAACACTCCGTTTCCAAGCTCATTGGAGCTCCACCTGGGTATATTGGATACTATGAAGGTGGGCAACTAACAGAGCCAGTGAGGCAGCGACCATATTGCGTAGTTCTTCTGGATGAAGTGGAAAAAGCCCACGTGGATGTTTTGAATATTCTTCTTCAAGTTTTAGATGACGGACGCCTGACCGACGGGCAAGGTTCCACAGTGGACTTCAGAAACACGGTTGTTATCATGACTTCCAATCTTGGAGCCGGGCACCTTCTTGCTGAAAAGTACTGCCCCAAGCATGTTGCTCGTGATAGGGTTCTCCGAAAGGTTAAAGAACATTTCAAGCCGGAATTTGTGAACCGGCTGGACGAGATTTTGATTTTCCGGCCGCTTTCGAAAGATCAACAAAGAAGGATCACTAAATCAATGATGCAAGACGTTTGCTCGCCGTCTTTCAGAAAAAGGCATTGCAATGGCCGTCACAGAAGCCGCTCTCGACTTCTCATAGGACAAAATGAAGCAGTTAATTCAATAGCTGAAGCAGTGATGAGGTTCAGAGCTGGGCTCGGAAGGCCGAACCAACCTAATGAGCTAGCCAAGGCTCTGGCTCAAGAGCTTTTTAATGACGAGAATCGTATGGTGCGAATTGATATGTCGCAGTACATGGAGAAACACTCCGTTTCCAAGCTCATTGGAGCTCCACCTGGGTATATTGGATACTATGAAGGTGGGCAACTAACAGAGCCAGTGAGGCAGCGACCATATTGCGTAGTTCTTCTGGATGAAGTGGAAAAAGCCCACGTGGATGTTTTGAATATTCTTCTTCAAGTTTTAGATGACGGACGCCTGACCGACGGGCAAGGTTCCACAGTGGACTTCAGAAACACGGTTGTTATCATGACTTCCAATCTTGGAGCCGGGCACCTTCTTGCTGAAAAGTACTGCCCCAAGCATGTTGCTCGTGATAGGGTTCTCCGAAAGGTTAAAGAACATTTCAAGCCGGAATTTGTGAACCGGCTGGACGAGATTTTGATTTTCCGGCCGCTTTCGAAAGATCAACAAAGAAGGATCACTAAATCAATGATGCAAGACGTTTATGGCGCTAGGCCGATCAGGCGGTGGCTGGAGAAGAAAGTGGTGACGGAGCTTTCGAAGATGCTTATAAAAGAAGAGATCGGCGAGGAATCCACCGTGTACGTGGATGCCGGCGACGGCGGAAAAGATTTGGAGTATAAAGTTGAGAAAAATAATGGTTTGATTAATGGAATCAAAGATGGAAGATATGAGATATTAATTCAAATTCCATGTGTTGGGAAAAATAAAGGTGATGAAAGTGAAGAAGACGAAGGGGGAGAAAATGGAGAGGACGTTGAAACGACGAGTGATATTGATTAG 2790 46.06 MAKSALETYGHDLVDKAENQKLDPVFGRHQEIRRLLTIICRKTKSNPMLIGEPGVGKTAVVEGLAQKIASGNNRELDMGALIAGTEYRGQFEERLKNVMKEVQDSEGKVVLFIDEIHLVVRNGGTAADILKPALGRGNFRCIGATTLKEYKRYIEKDTALARRFKQVYVNEPSVEESISILRVLKERYENHHALEIKDTALVAAAKLSHRYITGRQLPDKAIDLVDEASACLRVQLDTQPEEILELESKRAKFEVEVNALEKEDDKASQARLPQAKKELDELNNELQQLLTKHRKQKSEMDKLMKLKQKKEEILIQIEAAQKRQDLIRVADLRRQKLEEVDLKIDEVERRIKKQSFIVKDTVGPEEIADEVSRWTGVPVSRLTGKEKEWVMGLDRRLQKRVIGQNEAVNSIAEAVMRFRAGLGRPNQPNGSFLFLGPSGVGKTELAKALAQELFNDENRMVRIDMSQYMEKHSVSKLIGAPPGYIGYYEGGQLTEPVRQRPYCVVLLDEVEKAHVDVLNILLQVLDDGRLTDGQGSTVDFRNTVVIMTSNLGAGHLLAEKYCPKHVARDRVLRKVKEHFKPEFVNRLDEILIFRPLSKDQQRRITKSMMQDVCSPSFRKRHCNGRHRSRSRLLIGQNEAVNSIAEAVMRFRAGLGRPNQPNELAKALAQELFNDENRMVRIDMSQYMEKHSVSKLIGAPPGYIGYYEGGQLTEPVRQRPYCVVLLDEVEKAHVDVLNILLQVLDDGRLTDGQGSTVDFRNTVVIMTSNLGAGHLLAEKYCPKHVARDRVLRKVKEHFKPEFVNRLDEILIFRPLSKDQQRRITKSMMQDVYGARPIRRWLEKKVVTELSKMLIKEEIGEESTVYVDAGDGGKDLEYKVEKNNGLINGIKDGRYEILIQIPCVGKNKGDESEEDEGGENGEDVETTSDID 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29044164 29051385 - ClCG06G015710.1 Cla06g01547 275739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01547 929 Pfam C-terminal, D2-small domain, of ClpB protein 815 865 IPR019489 -
Cla06g01547 929 CDD AAA 663 813 - -
Cla06g01547 929 PANTHER ATP-DEPENDENT CLP PROTEASE 633 830 - -
Cla06g01547 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 376 IPR027417 -
Cla06g01547 929 SMART AAA_5 43 173 IPR003593 -
Cla06g01547 929 SMART AAA_5 428 582 IPR003593 -
Cla06g01547 929 Coils Coil 88 108 - -
Cla06g01547 929 CDD AAA 26 167 - -
Cla06g01547 929 Coils Coil 330 350 - -
Cla06g01547 929 MobiDBLite consensus disorder prediction 904 929 - -
Cla06g01547 929 Gene3D - 1 173 IPR027417 -
Cla06g01547 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 873 IPR027417 -
Cla06g01547 929 CDD AAA 402 595 - -
Cla06g01547 929 Gene3D - 380 594 IPR027417 -
Cla06g01547 929 Pfam AAA domain (Cdc48 subfamily) 661 808 IPR003959 GO:0005524|GO:0016887
Cla06g01547 929 Pfam AAA domain (Cdc48 subfamily) 428 590 IPR003959 GO:0005524|GO:0016887
Cla06g01547 929 Coils Coil 243 323 - -
Cla06g01547 929 SMART ClpB_D2_small_2 784 874 IPR019489 -
Cla06g01547 929 Gene3D - 174 375 IPR027417 -
Cla06g01547 929 Gene3D - 617 813 IPR027417 -
Cla06g01547 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 477 495 IPR001270 GO:0005524
Cla06g01547 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 539 553 IPR001270 GO:0005524
Cla06g01547 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 506 524 IPR001270 GO:0005524
Cla06g01547 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 432 450 IPR001270 GO:0005524
Cla06g01547 929 PANTHER ATP-DEPENDENT CLP PROTEASE 3 612 - -
Cla06g01547 929 PANTHER ATP-DEPENDENT CLP PROTEASE 828 878 - -
Cla06g01547 929 MobiDBLite consensus disorder prediction 912 929 - -
Cla06g01547 929 Pfam ATPase family associated with various cellular activities (AAA) 48 147 IPR003959 GO:0005524|GO:0016887
Cla06g01547 929 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 828 878 - -
Cla06g01547 929 Pfam AAA lid domain 173 274 IPR041546 -
Cla06g01547 929 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 633 830 - -
Cla06g01547 929 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 3 612 - -
Cla06g01547 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 611 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01547 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101217495 989.949
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01163 Cla06g01547 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01547 Cla-Chr6:29044164 Cla06g01783 Cla-Chr6:31246818 8.63E-63 dispersed
Cla04g01163 Cla-Chr4:26843030 Cla06g01547 Cla-Chr6:29044164 2.77E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01547 Cla_Chr06 FPKM 6.037429 5.801939 9.615993 10.532501 14.241714 12.355367 14.010575 8.295658 9.174674 8.368312