Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01548 ATGAAAAGAAAATCCAATATCCATAAGTATTGGACGAGCCGGTTCGGTTCAATTAAACCAATCGCATTCTTCATGCAGCCCGAAAATAGACCGGGCCGTATCCAATTCACCAGAACAATTATATCGAGGCTGAGTCGTCCAGACTTGAGAGCCAGTCAAGAGATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTGCTCCGGCAGTGAATCCACAAGATCTTCCCGTTGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGCTAGCCATCATATTTTGCGCCCAATCGCTTGCGAACATGAGGAATGTTGAGAACGATCTCAAGCAGATTTCTATGGCCATGATGTTTGCTATTATGGGATTAGTGACAAATTACTTGGGACCTGCGCGACCAGGAACAAAAAGTTAG 468 47.22 MKRKSNIHKYWTSRFGSIKPIAFFMQPENRPGRIQFTRTIISRLSRPDLRASQEMSTQANDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNVENDLKQISMAMMFAIMGLVTNYLGPARPGTKS 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29053848 29056612 + ClCG06G015720.1 Cla06g01548 275740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01548 155 MobiDBLite consensus disorder prediction 49 64 - -
Cla06g01548 155 Pfam PAT complex subunit Asterix 59 152 IPR005351 GO:0030176|GO:0044183|GO:0045048
Cla06g01548 155 MobiDBLite consensus disorder prediction 49 68 - -
Cla06g01548 155 PANTHER CGI-140 55 154 IPR005351 GO:0030176|GO:0044183|GO:0045048
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01548 K24963 WDR83OS; PAT complex subunit Asterix - csv:101206749 197.593
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g637 . . . . . . . . . . Cma10g00228 . Car10g00213 Car11g00179 Sed08g0258 . Cpe04g01468 Bhi02g00695 Tan09g2054 Cmetu02g0232 . . . . Cla06g01548 Cam06g1709 Cec06g1769 Cco06g1770 Clacu06g1676 Cmu06g1622 Cre06g2435 Cone2ag0818 . . . . . . . . . . . . . . . . Cmo10g00240 Cmo11g00203 . . . . . Cpe18g00765 . . . . . . . . . . . . . . Lsi06g01423 Csa01g00281 Chy02g02453 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004880 2 1 0 5 2 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01548 Cla_Chr06 FPKM 10.05662 10.352021 4.65883 4.736547 3.534781 4.349301 3.312942 3.895496 3.446481 3.016177
Cla06g01548 Cla_Chr00 FPKM 8.296206 8.558202 4.538261 4.729195 3.314243 4.368438 3.301147 3.847276 3.473834 3.228469
Cla06g01548 Cla_Chr00 FPKM 9.997061 9.952861 4.508786 4.561413 3.464951 4.3132 3.234539 3.677451 3.233999 2.890974