Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01564 ATGGAAATGTATTTCCGGCTTCTGTCTTTCTCATATAGAATAATTCAAAGGTCTCGGCTCCAACAAATTTGTACAAACTCGAACTCGGTTTTTCTAGCATCAGAAATGTCGAAATTTGTACATACCCAAGCGATGGATCTTCCTTCTCAGAGAACTAACGAGATAAAGATTCCTGATTACGAGGACGCCCTCCATGAGGAAGCCGATGGCGTGCGGAGGCGCGGGTATTTCCTCACGAAACTCATAGACGACTCTGTTTCGCATAATGGGTTCGAATCTATTGCTCGTATTTTCCCCAAGTTTCGTGGTTCTATTGATTCTCAGCTGTGTAACTCGATGATTAGGCGTTATTTGGATTTGAATAAGCATTTACATTCACTCTTCATTTTTGCCCACATGCATAAATTCAGTATTCTGCCCGATTCCTCCACTTTTCCTTGTGTTCTTAAAGCAACTGCAAAGCTATGTGCTAGTGAACTTGGAAAAATGATACATGGTACTGTTATTCAGATGGGTTTTGTTCGTGATGTCTACATAAGTACCGCTCTTGTTCATATGTACTGTTCTTGTTTGTCTATATCCGATGCTTCTCAGTTGTTCGACGAAATGCCTGAGAGAAATGCAGTTACTTGGAATGCTCTGATTACTGGTTATACTCATAATAGAAAGTTTATGGAAGCTACTAATGCTTTCAGAGGAATGTTGGCAGCTGGGGCTGAACCGAGTGAGAGAACCGTGGTGGTAGTTCTATCAGCTTGTGCTCATTTGGGAGCGTTGAATCAGGGAAAGTGGATCCATGAGTTTATATATCATAATAGGTTGAGACTGAACGTGTTTGTGGGCACAGCACTTATTGATATGTATGCTAAATGTGGGGCTGTTGATGAGGCAGAGAAGGTCTTTGAAGAAATTTGGGAGAAGAATGTCCATACGTGGAATGTCTTGATTTCTGGATATGCCATGAATGGGCAAGGCGATGCAGCTTTGCAGGCTTTTTCTAGGATGTTGATGGAAGATTTCGAGCCAGATGAGGTTACCTTTCTAGGTCTCTTGTGTGCATGCTGTCACCAAGGTCTGGTCACAGAAGGGCGCAGGCAATTCATGAGCATGAAACAACAGTTTGGACTGCAACCAAAGATCGAGCATTATGGGTGTATGGTTGACCTACTTGGTCGAGCAGGATTGTTGGAGGAAGCTCTACAGTTAATCCAATCCATGAGCATGGAGCCAGACCCTATCATTTGGAGGGCTCTGCTTTGTGCTTGCAGAGTCCATGGGAATACAAAATTGGGTGAATATACTATCAGAAGACTTATAGAATTAGAACCAAACAATGGCGAGAATTATGTCTTGCTGTCAAATCTGTACTCAAGGGAACAACGGTGGGCTGAAGTAGGGGAGTTGAGAGGAATGATGAGTCTCAGGGGGATTGGGAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAATGTAGTTTATGAGTTCGCAGCATCAGATGACAGAAAACCAGAATTTGAAGCAATATACAAGCAGTTGGATAATTTGATTGAAAAATTGAAAGAAAATGGTTACGTTATACGCACTGACATGGCTTTATATGATATTGAGAAAGAAGAGAAAGAACGTTCTGTGGTGTACCATAGCGAGAAACTTGCTTTAGCATTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAATCTGAGAATTTGCTTGGACTGCCATGAGTTTTTCAAAGTTGTATCACTTGTCTATAAAAGATATATTGTCGTGAGAGACAGAAACCGTTTTCACCATTTTTCCGAAGGTTTCTGTTCGTGTCGCGACTATTGGTGA 1848 41.61 MEMYFRLLSFSYRIIQRSRLQQICTNSNSVFLASEMSKFVHTQAMDLPSQRTNEIKIPDYEDALHEEADGVRRRGYFLTKLIDDSVSHNGFESIARIFPKFRGSIDSQLCNSMIRRYLDLNKHLHSLFIFAHMHKFSILPDSSTFPCVLKATAKLCASELGKMIHGTVIQMGFVRDVYISTALVHMYCSCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFMEATNAFRGMLAAGAEPSERTVVVVLSACAHLGALNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVDEAEKVFEEIWEKNVHTWNVLISGYAMNGQGDAALQAFSRMLMEDFEPDEVTFLGLLCACCHQGLVTEGRRQFMSMKQQFGLQPKIEHYGCMVDLLGRAGLLEEALQLIQSMSMEPDPIIWRALLCACRVHGNTKLGEYTIRRLIELEPNNGENYVLLSNLYSREQRWAEVGELRGMMSLRGIGKVPGCSSIEINNVVYEFAASDDRKPEFEAIYKQLDNLIEKLKENGYVIRTDMALYDIEKEEKERSVVYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVVSLVYKRYIVVRDRNRFHHFSEGFCSCRDYW 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29201148 29202995 - ClCG06G015890.2 Cla06g01564 275756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01564 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Cla06g01564 615 Pfam E motif 425 487 IPR046848 -
Cla06g01564 615 Pfam DYW family of nucleic acid deaminases 523 615 IPR032867 GO:0008270
Cla06g01564 615 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 81 589 - -
Cla06g01564 615 Pfam PPR repeat 382 407 IPR002885 -
Cla06g01564 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Cla06g01564 615 Pfam PPR repeat family 207 254 IPR002885 -
Cla06g01564 615 Pfam PPR repeat family 307 356 IPR002885 -
Cla06g01564 615 Gene3D Tetratricopeptide repeat domain 268 330 IPR011990 GO:0005515
Cla06g01564 615 Gene3D Tetratricopeptide repeat domain 331 500 IPR011990 GO:0005515
Cla06g01564 615 Gene3D Tetratricopeptide repeat domain 105 267 IPR011990 GO:0005515
Cla06g01564 615 PANTHER - 81 589 - -
Cla06g01564 615 TIGRFAM PPR: pentatricopeptide repeat domain 383 407 IPR002885 -
Cla06g01564 615 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Cla06g01564 615 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Cla06g01564 615 SUPERFAMILY TPR-like 288 464 IPR011990 GO:0005515
Cla06g01564 615 Coils Coil 502 522 - -
Cla06g01564 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01564 - - - csv:101215826 1066.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01564 Cla-Chr6:29201148 Cla06g01081 Cla-Chr6:23432994 2.38E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01564 Cla_Chr06 FPKM 2.639037 2.682091 3.566654 3.471459 6.669691 7.742394 7.337136 1.85459 2.062291 2.254775