Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01566 ATGAAGGAGAAAGAGACTGATAATCATTCATGGCGTCTTCCAATTATCACTTTCTTCATCTTAATCACAGGTAATCACCACAAAATCCCTTTTTCCCTTACCCCTTTTGATTTTTCTGAACTGGGTACTATTGTCGAGGGACAAGAATTGCAGAGAGACAGAGAAGTTTTGTTACAGTTGAAATCTTTTTTAGAAGAACACAATCCCATTAAACGAGGAAAATATTCGTTTTGGAATTTGCAGAGCTCGCCCTGTTCTTGGTCTGGAATATCCTGTAATCAAATCAATTCCCAAGTCACCGGAATTGACCTTTCAAACGAAGATATTTCCGGCAAAATTTTTCATAATTTCTCTGCGTTGCCGGGGCTGACCGACCTTGACCTCTCTAGAAACACTCTCTCCGGCGAAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGCGGCTGAATTTGTCACACAACATCATCAATGACAAGTTGAACTTGTCGGGGTTGGTCAATATCGAGACTCTGGATTTGTCGGTCAATCGGATTTGGGGAGAAATAAGGTTGAATTTTCCAGGCATTTGCAGAAATTTGATGTTCTTTAATGTTTCTGGTAATAATTTCACTGGTCGGACGGATGACTGCTTTGATGAGTGCCGGAATTTGCAGCATGTGGATTTAAGCTCCAACAATTTCAGTGGTAGATTGTGGGGTGGGTTGGCGAGGACTCGGATTTTTTCGGCGTCGGAGAATAAATTTTCCGGCGAGGTCTCGCCGGCGATATTTACAGGGGTTTGTAATTTGGAGGTGTTGGACTTGTCAGAGAATCAGCTTTCCGGCGGAGTTCCAGCGGAAGTTTCTAATTGTGGGAATTTGTCTTCTTTGAATCTGTGGGGGAACCAATTTTCCGGGAAAATTCCGGCGGAAATTGGAACAATTTCGGGTTTGCAAAATTTGTATCTGGGAAAGAACAATTTTTCTCGGGAAATTCCAGAATCCCTTTTGAATCTGAGCAATTTGGTGTTTCTTGATTTGAGCAAGAACAATTTCCGAGGGGACATTCAAGAAATTTTCGGAAGGTTTACACAGGTGAGATTTCTTGTTCTTCATGGGAATTTTTACACTGGAGGGATTTATTCTTCTGGGATTCTTAAGTTGCCAAGAGTTGCTCGTTTGGATTTGAGTTTCAACAACTTTTCAGGTCCATTGCCTGTGGAAATCTCTAAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAATCACTTCAATGGGAGCATTCCATCAGAATATGGGAACTTGCAGAATCTTCAAGCTCTTGATCTCTCATTCAACAGCTTAAAGGGGTCAATCCCAAGCAGCTTTGGGAACTTGACTTCACTCTTGTGGCTAATGCTGGCAAACAACTCTTTGACAGGTGAAATCCCCAGGGAGCTGGGAAATTGTTCTAGCTTGTTGTGGTTGAATCTAGCCAACAATAAGCTATATGGGCGCCTTCCGTCCGAGCTAGCAAACATTGGAAAAAATGCCACAGCGACGTTCGAACTGAATCGACGAACCGAAAAGTTCATTGCTGGATCGGGGGAGTGCTTGGCAATGAAGAGATGGATTCCAGTAGACTACCCTCCTTTCAGCTTTGTCTACACAATCCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGACTGTTGAAAGGATATGGCCTTTTCCCATTTTGCAGCAAAATAAGGACTTTGCAGATCTCTGGTTATGTTCAGTTGACTGGGAATCAGTTCAATGGTGAGGTACCAAATGAGATTGGAACGATGAAGAACTTCAGTATGTTGCATTTGAGTTGCAACAATTTCAGTGGGAAACTCCCTCCACAGTTGGGAAATCTGCCGTTGGTTGTTCTAAACATATCCGAAAACAATTTTTCAGGTGAGATCCCAACCGAGATTGGAGGCCTCAAGTGCTTGCAGAATCTTGATTTATCATACAACAATTTCTCTGGCATGTTCCCTAGAAGTTTGGTCAACTTGAATGAGCTTAACAAGTTCAACATCTCATATAATCCTCTCATAACTGGGGAAGTAGTTCCAAGTGGGCAATTCTCGACGTTCGACAAGGACTCGTATCTCGGTAATCCTCTTTTGCGCCTGCCTTCTTTCTTCAACACAACCCCACCAAAGTCACCAGGCAACCCAAGAATGGCAGGATCTTCGAAAAGGAATTCAAGGCTAATTGGAATGTTGGCTTCCATATCACTGATCCTTGCTTTTTTGGTATTTGGGACATTTTCTCTTATAGTTTTCTTAATGGTGAGAAGCTCAGATGAATCACGAGGATTTCTTTTGGAAGATATAAAATATATAAAAGACTTTGGTTCAAGTTCTCACACCTCATCCCCATGGTTTTCGAATACGGTTACAGTCATTCGTCTCGACAAGACGGTTTTTACACATGCTGATATTCTAAAAGCCACTGGAAACTTTTCAGAGGATAGGGTGATTGGTAAAGGAGGGTATGGAACAGTTTACAGAGGAATGTTACCTGATGGAAGGCAAGTGGCGGTGAAGAAGCTTCAGAGAGAAGGAACTGAAGGTGAAAGAGAGTTCCAAGCGGAAATGCAGATTCTTAGTGGAAATGGCTTCAACTGGCCGCACCCAAACCTTGTTCAACTTTACGGATGGTGTCTTGATGGGTCGGAGAAGATTTTGGTCTATGAGTACATGGAAGGAGGGAGCTTGGAAGATCTCATACTAGACAGAGTCAGACTAAACTGGCGGCGACGCATTGATCTTGCAATCGATGTGGCACGAGCACTGGTCTTTCTGCACCATGAGTGTTTCCCCTCTGTTGTGCATCGTGATGTCAAGGCCAGTAATGTTCTGCTCGATAAAGATGGTCGAGGACGGGTGACAGACTTTGGCTTGGCTAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCTGGAACCATCGGTTATGTAGCACCCGAGTATGGACAAACATGGAAAGCTACAACAAAAGGCGACGTGTATAGTTTTGGAGTTTTGGCAATGGAACTTGCTACAGCAAGACGAGCACTCGACGGAGGGGAAGAGTGTCTAGTTGAATGGGCCAAAAGAGTGATGGGAAATGGAAGACATGGGTTGAGTAGAGCAGTGATACCAGTTGCAGTTTTGGGGTCGGGCCTCGTCGAGGGGGCCGACGAGATGTGCGAACTGCTCAAGATTGGGGTGAGGTGCACAAACGAAGCACCATCGGCAAGACCAAATATGAAGGAAGTACTAGCTATGTTGATCAATATCATAGGCTTAAGAGGGGGGGATGAATTCAGCCACATCTTCTCCCCTCCATCCTTGTGA 3348 43.85 MKEKETDNHSWRLPIITFFILITGNHHKIPFSLTPFDFSELGTIVEGQELQRDREVLLQLKSFLEEHNPIKRGKYSFWNLQSSPCSWSGISCNQINSQVTGIDLSNEDISGKIFHNFSALPGLTDLDLSRNTLSGEIPGDLNNCRNLRRLNLSHNIINDKLNLSGLVNIETLDLSVNRIWGEIRLNFPGICRNLMFFNVSGNNFTGRTDDCFDECRNLQHVDLSSNNFSGRLWGGLARTRIFSASENKFSGEVSPAIFTGVCNLEVLDLSENQLSGGVPAEVSNCGNLSSLNLWGNQFSGKIPAEIGTISGLQNLYLGKNNFSREIPESLLNLSNLVFLDLSKNNFRGDIQEIFGRFTQVRFLVLHGNFYTGGIYSSGILKLPRVARLDLSFNNFSGPLPVEISKMKSLEFLILAYNHFNGSIPSEYGNLQNLQALDLSFNSLKGSIPSSFGNLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLYGRLPSELANIGKNATATFELNRRTEKFIAGSGECLAMKRWIPVDYPPFSFVYTILTRKSCRSIWDRLLKGYGLFPFCSKIRTLQISGYVQLTGNQFNGEVPNEIGTMKNFSMLHLSCNNFSGKLPPQLGNLPLVVLNISENNFSGEIPTEIGGLKCLQNLDLSYNNFSGMFPRSLVNLNELNKFNISYNPLITGEVVPSGQFSTFDKDSYLGNPLLRLPSFFNTTPPKSPGNPRMAGSSKRNSRLIGMLASISLILAFLVFGTFSLIVFLMVRSSDESRGFLLEDIKYIKDFGSSSHTSSPWFSNTVTVIRLDKTVFTHADILKATGNFSEDRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGTEGEREFQAEMQILSGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLEDLILDRVRLNWRRRIDLAIDVARALVFLHHECFPSVVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMELATARRALDGGEECLVEWAKRVMGNGRHGLSRAVIPVAVLGSGLVEGADEMCELLKIGVRCTNEAPSARPNMKEVLAMLINIIGLRGGDEFSHIFSPPSL 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29215387 29218856 - ClCG06G015910.2 Cla06g01566 275758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01566 1115 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 37 1103 - -
Cla06g01566 1115 ProSitePatterns Protein kinases ATP-binding region signature. 827 850 IPR017441 GO:0005524
Cla06g01566 1115 Gene3D Ribonuclease Inhibitor 50 210 IPR032675 -
Cla06g01566 1115 SUPERFAMILY Protein kinase-like (PK-like) 801 1094 IPR011009 -
Cla06g01566 1115 Gene3D Phosphorylase Kinase; domain 1 786 900 - -
Cla06g01566 1115 CDD STKc_IRAK 827 1097 - -
Cla06g01566 1115 ProSiteProfiles Leucine-rich repeat profile. 146 167 IPR001611 GO:0005515
Cla06g01566 1115 SUPERFAMILY L domain-like 569 684 - -
Cla06g01566 1115 SUPERFAMILY L domain-like 98 498 - -
Cla06g01566 1115 Pfam Leucine rich repeat 104 155 IPR001611 GO:0005515
Cla06g01566 1115 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Cla06g01566 1115 SMART serkin_6 821 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01566 1115 Gene3D Ribonuclease Inhibitor 377 521 IPR032675 -
Cla06g01566 1115 Pfam Protein kinase domain 822 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01566 1115 Gene3D Transferase(Phosphotransferase) domain 1 901 1101 - -
Cla06g01566 1115 ProSiteProfiles Protein kinase domain profile. 821 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01566 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 943 955 IPR008271 GO:0004672|GO:0006468
Cla06g01566 1115 Gene3D Ribonuclease Inhibitor 561 721 IPR032675 -
Cla06g01566 1115 Gene3D Ribonuclease Inhibitor 211 376 IPR032675 -
Cla06g01566 1115 Pfam Leucine rich repeat N-terminal domain 51 93 IPR013210 -
Cla06g01566 1115 PRINTS Leucine-rich repeat signature 430 443 - -
Cla06g01566 1115 PRINTS Leucine-rich repeat signature 264 277 - -
Cla06g01566 1115 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 37 1103 - -
Cla06g01566 1115 SMART LRR_typ_2 261 285 IPR003591 -
Cla06g01566 1115 SMART LRR_typ_2 454 478 IPR003591 -
Cla06g01566 1115 SMART LRR_typ_2 430 453 IPR003591 -
Cla06g01566 1115 SMART LRR_typ_2 120 144 IPR003591 -
Cla06g01566 1115 SMART LRR_typ_2 646 669 IPR003591 -
Cla06g01566 1115 SMART LRR_typ_2 309 333 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01566 - - - csv:105436350 2040.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01142 Cla-Chr1:19196289 Cla06g01566 Cla-Chr6:29215387 7.04E-13 dispersed
Cla06g01566 Cla-Chr6:29215387 Cla09g00322 Cla-Chr9:3110777 1.01E-133 dispersed
Cla10g01744 Cla-Chr10:33385510 Cla06g01566 Cla-Chr6:29215387 5.04E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80657 PF00069 Pkinase 1.10E-42 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01566 Cla_Chr06 FPKM 9.671795 8.05393 0.703712 0.645067 22.935158 21.655664 17.515301 3.12544 2.139909 1.737498