Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01567 ATGAGCCCATTCACGCCAAACGTGACCCGAATCGGACTCGTGCCTAGCAGAGGTCATCGTCTTCTTCCTTCCCCTGGTTGCCGCCGCCCCCTTGTTCAATATCGTTATCCGGCGATCACAGACCACGAGCGGGGAGCCTCCGACGAGCAGCGTCAACGTCCTACAGAATCCGGCGATTCATCTTTGCGCGACCTCACCCACCATCGTTTCTCTCCGTTTCGACGTCGTCCCACTCTCCGGTTGATCTCCAGTCAGTTTACCCACAAGCAACACGTTTGGACGTTTTCAACACCAACCGGCAAGGATCTGAACCTTTTCGCTACTTGGGAGGCCTCGAATTTCATGAAGCAACAATTTCCTGATCTTCACCTTGAGGACAGGGTGAATCTAGAGATGGTGGGTATTGTGAGGCCCCCGATTATCCACACATGGGATAAGGGCTCTAGCGGCTTTAACGATTCCGGACCTGTTATCAAGGCCAGCCAATTATTCATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGAGCCTTCGTTCAAGCCTACCGTCAAGCCCTTGCAAATGCTTCAAAGTCTGGTGTTGCTCAAGAAACAATACAAAACACGGTTCACCGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAAATTCTTGGTGTCGCCGAGGAAACGCCTTGGGAGGAAGTTGTGAAGAAATATGACGCTTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAAGAACGATTAGAAACTCTCTATCAAAACAAAGCTTCAATTTGTCTTTACAACGGCGCCAAGAAGAAGAAAAGAGAAAATGCCTATGTGATATTCCTCCGCCAATCACTTCCCAACAGTTTCACCCTCTTCGTTACTGACAATTCCCGCCGCCTTGGTACCTCCGAATCCCAAACGGAGATCTCTATTTCCTCCGATATCAACATGAACAATCCTCCCAATTCTTCTCTCCTTCTTCGCTCCGCCTCCTATTTTCTTCCCTACTTCCCCTCTTTCACATTTTGGCTTCTCAATCTTCCAGGTAAGTTCTTTAAATGGAAAGAATGGGAGAGATTGATACGAAACCTATTGATTCTGTACAAGCTGAACAAACATAAGCTTGCAGTTACAGCCAATAATGGGTATGAGAAGGAAAGAGTACTTCAAGAGTTAATAAAGGATTTGGCTAATTACAAGGTTCAACTTGAAGCAAAGGATGCGGCTTACATGCAGGCTCTTCTCAAGCTGGAACAACAACAGAAAGCCATCAACAAACTTTCTGAGTTGCTGAAAATTGCGGAAACTAATAGAGATAGATATGTCAATGAATGCAGTGAAGCTAGAGTGCTGCTAGGTGAACTTGAACCAGAACAGAATGAAATGGCTGATCAATCCTTGGAGACTGAAAATTTTCGAGGGCAGCTTCAGGTTGTTGAGAGTGAGTTGAAGATCAGACAAGAGGATCGTCTTGGCATTGAAACAGAACTTTCTGCTTGTGGAGAAGCAGAGGTCAATGGTATTACAAAAGTAGAGTTGCTGGAAAGTAATGGCCGCTTGGAAGAGGAGAAGACTGCAGATCTCATAAGACAGATCTCAGAACTGAATGAAGCAATTCGTTTGTCTAAATTTGTTGCTTGTGAAGCAGAGAAGGAGATATCTGCTGCATTATCAGTGAAAGATGCCGAGCTAGAGCTAACTAAGGAAATAGTCGTTGAGTTGCACAAGCAATTGGAAGAGATGAAGAAGCAAACAGAATTAGACATGGAACATAATCAATTAAAAGAAGTGTACTTTGCAAATGAAGAAACTGAAAAATTCAAGGATGAGATCGAAACACTTAAGAATCAGTTGGAGCAGATGGAACTTGAAATGGATGAGATGAGAGAAAGGGAAGCTAGTGCTCAGGTTGAGATTGCATTGCTGAAATCTGAGCTTGGAAGGTCAAAAGTTACAGCAGCAGAGGCAACTGAACCCAAAGCGGAAAGTGCAAAATCCGGCCTTTATCTTGCTGTTCAGGACTTGGTTGTAGAAGCAGCCGAAGTGAAGCCACTTTTTGAGAGAAACTCTTGCATGGAAGAAGATTTGAACCTTGAAGTCAATGAAAGAAGGAACGAGAATGACACAATAACGATTACTTCGAAGGAATATCAGTCCTCAATTGAGAATATTGACCCAACCTCTGAACTTTCAGACAAAATTTCCCATCATATCAGTTCTGAGAGCACAGATGAATTAGAAAAGTTGAAGAAGGAACTAGAAGCAGCAACCATAAGAATTGGGGAGTTCAGGTCACGTGCAGAACAAGCTACCACTAGAGCTGAGATGGCTGAGAAAGCAAAAGAAGCCATTGAAGACCAGCTGAGAAAATGGCGAGAGCATAAACAAAGAAAAAAGGCTGCTCTTGCTGCCATGAAGGAAGTCTCTGCACCGCCAAAATTCAAACCATCCATGTATGGAGACAGCTCCACAGCTTACCAGCCTTTAGGTAAGGTTCTTAACTTAAAATTTTAG 2559 44.0 MSPFTPNVTRIGLVPSRGHRLLPSPGCRRPLVQYRYPAITDHERGASDEQRQRPTESGDSSLRDLTHHRFSPFRRRPTLRLISSQFTHKQHVWTFSTPTGKDLNLFATWEASNFMKQQFPDLHLEDRVNLEMVGIVRPPIIHTWDKGSSGFNDSGPVIKASQLFMAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTVHRASKVMTEQEARQILGVAEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKASICLYNGAKKKKRENAYVIFLRQSLPNSFTLFVTDNSRRLGTSESQTEISISSDINMNNPPNSSLLLRSASYFLPYFPSFTFWLLNLPGKFFKWKEWERLIRNLLILYKLNKHKLAVTANNGYEKERVLQELIKDLANYKVQLEAKDAAYMQALLKLEQQQKAINKLSELLKIAETNRDRYVNECSEARVLLGELEPEQNEMADQSLETENFRGQLQVVESELKIRQEDRLGIETELSACGEAEVNGITKVELLESNGRLEEEKTADLIRQISELNEAIRLSKFVACEAEKEISAALSVKDAELELTKEIVVELHKQLEEMKKQTELDMEHNQLKEVYFANEETEKFKDEIETLKNQLEQMELEMDEMREREASAQVEIALLKSELGRSKVTAAEATEPKAESAKSGLYLAVQDLVVEAAEVKPLFERNSCMEEDLNLEVNERRNENDTITITSKEYQSSIENIDPTSELSDKISHHISSESTDELEKLKKELEAATIRIGEFRSRAEQATTRAEMAEKAKEAIEDQLRKWREHKQRKKAALAAMKEVSAPPKFKPSMYGDSSTAYQPLGKVLNLKF 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29229821 29242356 - ClCG06G015920.2 Cla06g01567 275759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01567 852 Coils Coil 404 459 - -
Cla06g01567 852 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 601 852 - -
Cla06g01567 852 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 386 601 - -
Cla06g01567 852 Coils Coil 754 816 - -
Cla06g01567 852 MobiDBLite consensus disorder prediction 41 67 - -
Cla06g01567 852 Gene3D DnaJ domain 217 275 IPR036869 -
Cla06g01567 852 Coils Coil 579 610 - -
Cla06g01567 852 MobiDBLite consensus disorder prediction 38 67 - -
Cla06g01567 852 PANTHER EXPRESSED PROTEIN 601 852 - -
Cla06g01567 852 PANTHER EXPRESSED PROTEIN 386 601 - -
Cla06g01567 852 Coils Coil 612 660 - -
Cla06g01567 852 Pfam Pam16 165 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01567 - - - bhj:120070652 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01021 Cla-Chr1:15634686 Cla06g01567 Cla-Chr6:29229821 5.53E-74 dispersed
Cla06g01567 Cla-Chr6:29229821 Cla09g00800 Cla-Chr9:8179127 3.50E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g597 . . . . . . . . . . Cma10g00210 . Car10g00197 . . . . Bhi02g00288 . . . . . . Cla06g01567 Cam06g1733 Cec06g1793 Cco06g1793 Clacu06g1700 Cmu06g1646 Cre06g2457 . . . . . . . . . . . Bda14g00863 . Bpe15g00592 Bma03g00841 . . Cmo10g00228 . . . . . . Cpe18g00779 . . . . . . . . . . . . . . Lsi06g01442 Csa01g00263 Chy02g02470 Cme02g01858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010317 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01567 Cla_Chr06 FPKM 3.149606 2.82265 0.0 0.0 2.9598 2.771426 4.698778 0.475407 0.0 0.0