Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01568 ATGATTGGCTCCAATCCGCTGGACGACGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGATCGCTGGCGTAAGGATGCCGCTGGTAATGTCGTCTGTAAGCGTTTCTGCAACTGCCAGGGCTGCCTTTGCTTTGAATACGATCACATTGTCCCCTACTCCAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGATGTTGATACGTCTGAGTTAAAAGGCTATTCATGTGACGTCAAGTTTACTGATAAGGAGCTTGACGTAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGTTTGGCCCCTTGCAAATTGCCATATAATGAAGATTCTTTGTAA 582 48.8 MIGSNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29242457 29246019 + ClCG06G015940.2 Cla06g01568 275760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01568 193 PANTHER HNH ENDONUCLEASE 22 191 - -
Cla06g01568 193 Gene3D - 62 142 - -
Cla06g01568 193 MobiDBLite consensus disorder prediction 1 42 - -
Cla06g01568 193 MobiDBLite consensus disorder prediction 11 31 - -
Cla06g01568 193 CDD HNHc 79 118 IPR003615 -
Cla06g01568 193 Pfam HNH endonuclease 78 112 IPR002711 GO:0003676|GO:0004519
Cla06g01568 193 PANTHER F6A14.21 PROTEIN 22 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01568 - - - cmax:111471509 352.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01568 Cla-Chr6:29242457 Cla06g01587 Cla-Chr6:29411422 2.42E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g594 . . Bda06g00533 . . . . Bma12g00979 . . . Cma11g00122 . . Sed08g0243 . Cpe04g01478 Bhi02g00292 Tan09g2087 Cmetu02g1591 . Hepe09g0094 . . Cla06g01568 Cam06g1734 Cec06g1794 Cco06g1794 Clacu06g1701 Cmu06g1647 Cre06g2458 . . Cone13ag0067 Cone19ag0068 . . . . . Blo15g00324 . . Bpe07g00769 . . Bma08g00281 . . Cmo11g00190 . . . . . . . . . . . . . . . . . . . . Lsi06g01443 Csa01g00261 Chy02g02474 Cme02g01860
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011198 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01568 Cla_Chr06 FPKM 19.947565 20.005619 17.813477 14.900976 19.900826 15.391006 23.361092 21.905735 19.950775 20.915615