Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01570 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGTTACAAAGCCACTTTCCTGATGCCTCATTCATGGTTTTCAACTTCAGAGAAGGTGGCAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTTTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAATCCTCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCGGATACACCTCTAGTTTTGGATTGTTTAATACTAAGAGTTTTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCAGCACCGGCCAATAGAACTTCAAAGCTTTTATTTTCGACATCAATCAAAAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATATGGATGAAGATCTAGTACACGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCATTTGTTAGATCAAACATAATGATGCTGAACCGTGATGAAGTTGATGTTTTATGGGATGCGAGGGAGCAGTATCCCAAGGACTTCAGAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAGTCTCACCACATCCTTCGATGATGAAGATGGAAATGAAACTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTCGAAGAGATCTTCAGTAGTGTAATTGATGGCCAGGAAGCAAAGGGGTCCAGTGATCCTCAAGTAGTCAATCATATAAACCGTAAAGAAGATTGGAAGGAGGACTTCGATCCTCCTGCATTCCAGGATTGTGACGATGGAAATCTTAAGCATGATAAGAAATCAGATTTTGATGCAGTGAAGGACATTACTGTGGATGATGTGAAGTACAAACTGGATGAAAATATATATTCTGATCTTAATGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAATTCCTTTTTGGTTGCTGCTAATGTCCCGACTCATGCGAAAATCCAGGGGTTGGTGGATGATGCATACGAGAAATGTGAAGGTATGGAAGAAAAGGATGATGGAAGAGATACTACACCTGAGAAATTGGAAAACAAGGTTCTGCAGAAAAAGTTGAGTGCTGATGGCTCTAGACAAAAATCAGAAAAATTGCAAACACCGATTCCCAAGAAACAGCCTATTTCAAGTGGAAAACCGACCGCTGATATGGGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTCTCTGCAAAACAAGCGAAGCCAAATGCAGTTTCTAGGTGGATCCCTCCTAACAAAGGCTCCTATATGAATTCTATGCATGTTTCCTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCATCATCGAAGGATGTAAATGCAAATTCCAAAACGAAGGCTGCTGCCACTACAGATTCTCTGGTTGCTACAGATGTTTTTACTGAACGAAAAAACTATGAAGTGGATTCTGTGAGGCCTTCACACTCCGCCCCTGGGAACCTCATGCTTGGCCCATCATCTCCAGTTGAGTCAATTGAGGAGACATATTCTTCCTCTGAAACTTTAAAACCATCACATAGTGATGCACAACTTGGAGTACCACTTCCCCCCTTGCCCACAAAGCCTCCATCTCCATATTTACCATCACCCCGCCAGGCAAATGAAATACCTCCTCCACCTCCTCCACCTCCTCCACCACCCACTTCATTTCATCATATAGCTACAAGGTCCTCTGCTCTACCACTTTCCGCGTCTTTAGCACCACCATTCATAGTTAACTCACCAAAGGCAGTGAATACCCCTGCCCCTCCCCCTCCCCCTCCCCCTCCATCTAGTAGGCAGAATAGTGTTTTGCCCCATTCTTCAACACAACCATCATGGGAGCAAATATATTCTTCCGTTTCTACTGGAACAGTGACTGATTCTATACCTCCTCCACCCCCACCTTCCTCTGTGGGCATGCCATCTACATTAAAGAATATTGTAACCCCTCCCCCTCCTCCCCCGCCCGGGGGTGGTAGAGCCCCTCCCCCGCCCGGGGGTGGTAGAGCCCCTCCCCCGCCTCCCCCGCCTGGGGGTGGTGGAGCACCAACACCACCTCCCCCTCCTGGTGGAGGTCGTGGAGCACCTGCCCCTCCTAGACCTCCTGGTGTTGGACCTCCTCCACCTCCACCATTAGGTGCTAAAGGAGCAAATGCTCCACCTGACCCGAGAGGTTTGTCTTCTGGGAGAGGGCGTGGGCTAACACGCTCAACAGCTACAGCACCTCGAAGGTCCTCCTTGAAACCTCTACATTGGAGCAAAGTAACGAGGGCTCTGCAAGGGAGCTTGTGGGAAGAACTACAAAGATACGGCGAGCCTCAAATTGCTCCAGAGTTTGATGTGTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTCCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGCAAAGAAGGAAAGATATTCCTCCTCAAAACATCTCTAGAAATCAAGAACCTGCAAGAACTCCTCCAAGGGGACAAAATAGTGAATTTCAGCCTGCAAACCATGCTCAAAATCATGTTCCAATCCATTTACAACTCGAAGTCACTGTCAGATCGATTCCTCATATTCTGCTTGGATGTGAGTCTGAATCTGACTCCAGTGATGATGAACCTCGATATAATACTCCCGTCTCATTGATAGAAATGGACTTATCAAAGATTGACCTCAGGAGAGCTAATAACACCGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGATGAGTCAGTTTTAGATGTTGATCAGGTGGAAAATCTCATAAAATTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATATGGATAACCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATACAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCTGCATGTGATGAGGTTAGGAATTCTACCAAATTGAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACATTGAATCAAGGAACAGCAAGGGGTTCTGCAGTTGGCTTCAAGCTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTCATGCACTATCTTTGCAAGGTCCTCGCTTCAAAGACACCAGCTCTTCTAAATTTTCATTTGGACCTGGGTAGCCTCGAGCCAGCAACCAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGTCCAGTCTCTGAAGTTTTTCGCAAGACGCTGAAAGAATTTATTGCTATTGCTGAGACAGAGGTGACATCTGTGACAAATCTATACTCTACTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGATCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACACTATTGAACTTCGTGAGATTATTTCGGAAAGCCCACGAAGAAAACTGCAAACAGGCTGAATTGGAAAAGAAAAAGGCCGAGAAGGAAGCCGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 4197 44.56 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSQLRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECIHMDEDLVHEEMMFRVMFHTAFVRSNIMMLNRDEVDVLWDAREQYPKDFRVEALFLDADAVVPSLTTSFDDEDGNETGAASPEEFFEVEEIFSSVIDGQEAKGSSDPQVVNHINRKEDWKEDFDPPAFQDCDDGNLKHDKKSDFDAVKDITVDDVKYKLDENIYSDLNAVKDIAVDDGDMNSNSFLVAANVPTHAKIQGLVDDAYEKCEGMEEKDDGRDTTPEKLENKVLQKKLSADGSRQKSEKLQTPIPKKQPISSGKPTADMGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYMNSMHVSYPPSRYNSAPAALASIASSKDVNANSKTKAAATTDSLVATDVFTERKNYEVDSVRPSHSAPGNLMLGPSSPVESIEETYSSSETLKPSHSDAQLGVPLPPLPTKPPSPYLPSPRQANEIPPPPPPPPPPPTSFHHIATRSSALPLSASLAPPFIVNSPKAVNTPAPPPPPPPPSSRQNSVLPHSSTQPSWEQIYSSVSTGTVTDSIPPPPPPSSVGMPSTLKNIVTPPPPPPPGGGRAPPPPGGGRAPPPPPPPGGGGAPTPPPPPGGGRGAPAPPRPPGVGPPPPPPLGAKGANAPPDPRGLSSGRGRGLTRSTATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPKPADKSGGRRKSVGSKTDKVHLQRRKDIPPQNISRNQEPARTPPRGQNSEFQPANHAQNHVPIHLQLEVTVRSIPHILLGCESESDSSDDEPRYNTPVSLIEMDLSKIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMDNLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSTKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEVFRKTLKEFIAIAETEVTSVTNLYSTVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKAEKEAEMENAKGISLTKKSVK 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29256796 29279739 + ClCG06G015960.1 Cla06g01570 275762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01570 1398 MobiDBLite consensus disorder prediction 1373 1388 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 512 544 - -
Cla06g01570 1398 ProSiteProfiles Formin homology-2 (FH2) domain profile. 903 1386 IPR015425 -
Cla06g01570 1398 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 963 987 - -
Cla06g01570 1398 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 522 536 - -
Cla06g01570 1398 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 988 1012 - -
Cla06g01570 1398 CDD PTP_PTEN-like 16 190 - -
Cla06g01570 1398 Gene3D Formin, FH2 domain 1062 1392 IPR042201 -
Cla06g01570 1398 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Cla06g01570 1398 SMART PTEN_C2_2 198 338 IPR014020 -
Cla06g01570 1398 Coils Coil 1267 1287 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 958 1012 - -
Cla06g01570 1398 Coils Coil 1361 1390 - -
Cla06g01570 1398 PANTHER FORMIN-J 1 1391 - -
Cla06g01570 1398 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 767 792 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 687 722 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 812 883 - -
Cla06g01570 1398 Gene3D - 205 336 - -
Cla06g01570 1398 SMART it6_source 901 1396 IPR015425 -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 750 766 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 639 914 - -
Cla06g01570 1398 Pfam Formin Homology 2 Domain 1063 1360 IPR015425 -
Cla06g01570 1398 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1067 1387 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 1373 1398 - -
Cla06g01570 1398 MobiDBLite consensus disorder prediction 662 678 - -
Cla06g01570 1398 Gene3D Formin, FH2 domain 900 1018 IPR042201 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01181 Cla06g01570 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00625 Cla-Chr2:6960842 Cla06g01570 Cla-Chr6:29256796 5.37E-07 dispersed
Cla05g01683 Cla-Chr5:28487074 Cla06g01570 Cla-Chr6:29256796 2.89E-20 dispersed
Cla06g01570 Cla-Chr6:29256796 Cla07g00225 Cla-Chr7:2464641 1.80E-10 dispersed
Cla04g01181 Cla-Chr4:26995366 Cla06g01570 Cla-Chr6:29256796 4.92E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01570 - - cmo:103494331 1391.71