Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01573 ATGGCCATGCCCGAGCCTTCGTCCAGTTTGCCCGTGGATTCTCTCGGCGACATCGATGACTACATTTGGGCCAATGAAGGAGAGGATCAATTGCCATGGGACATGTTCAGGCATGTTTTTGAATTCGTACAAAATGGAAATCAAGCATTTAAAGATAACCACTTTGAAGAGGCAATCAAGTATTACTCAAGAGCTAATAACATCAAACCAGGTGATCCAGTTATTCTCAACAATAGAAGTGCTGCTTATATCAGGATTAGTCAATTCCTGAAAGACAGACCACCAGCCGCTTCTGAATATCGACCATTGAATGGGTTGGATCCTACAGTACATGCTGAACTTGCACTAAAAGATGCTGAGAAGCTGATGGACCTATGCGGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATTCTCCTAGAAAAATATGACATGGCAAAGGATATTATGCTTTCTGGCCTTCAAATTGACCCTTTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGAATAGTTGCGAGTATGACGGGAAGGGGACGCCATGGGCTACAAGATCGTAGCGATGACTTTGATTGCACCCTTTGTCTTAAGCTTCTTTATGAACCCATCACAACTCCTTGTGGGCATTCTTTCTGCCGTTCTTGCTTATTTCAGTCAATGGATCGTGGTAACAAATGTCCGTTGTGCAGAACAGTTCTTTTTATCAGTTCAAGAACATGTGCAGTCAGTGTTACACTGAGCAACATTATACAGAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGTCAGAACATGATGGTTCGACGAATTTTGGTGTCGATTTAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTTCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTTATTGTGGATTCTACAACTGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATCACGGAGTGTGAGCCACTTGCGGACGGACGTTTTTATCTAGAGATTGAAAGTCGTCGAAGATTTCGCATTATTCGATCTTGGGACCAAGATGGGTATCGGGTGGCAGAGGTCGAATGGGTCAATGATATAACTCCCCCAGAAGGGACAATAGAGCGGGCAGAACTGCAGGAAATGACAATTAACGCAGCAGAGTACGCCCAGTCATGGATAAGGAGGGCAAAAGAAGCATCTAGACGAGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGACAGATACAAGAGAGCTCTTCCCCCTCCACTTCCGGCGGTGGCCATGGGAGGAGAATTTTCTAGGGCTCCAAACCCTCGAATTCCTTTCTCCTCCCTTCTCCTCCTCCTCCTCTCTCTCTGCCTCTCCGCCGCTCTCTCCGCCGCCCAAACCCCCTCATTCCGTTCCTTCTCCCCTCGCGACGCTTATTTGATCAACTGCGGCTCCCCGGCCCAAACCCGTCTCGACGACGGTCGGATTTTCAAATCCGATCGCGAATCCACTTCTCTCCTTTCCACCGAAGAAGACGTTCAGATTTCCGTCGATTCCATTCCCTCAAACGCCGCTGTTTCGCCTCTCTCTTCTTGGTCATTACCTCTATTTCGCTCCGCTAGAATTTTCCCCGACGATTCCACCTACACTTTCTTCATTTCTCAGCCCGGCCGCCATTGGATCCGCCTCTACTTTTACCCTCTTCCTCACCCTAATTACAATCTCTCCGATTCCGTTTTCACCGTCACCACCGATACCTTCGTTCTCCTCCATGATTTCTCAATCAAACCCAATCCAAAAATCGTCTTCAAGGAATACCTAATCAACATTACCACCGATCGATTCTCCCTCCAGTTCAAACCTAAGAAGAATTCCTTCGCCTTCGTCAATGCCATTGAAATCGTCTCCGCTCCAGATCCTCTGTTTTCCGATTCCGCCAACTCTGTTTCTCCGGTGGGATTTTTCAACGGATTGTCGAACATTGCTCTGCAAATTTGCTACCGTGTTAATGTGGGTGGCCCTGAACTTGTTCCTAAAAACGATACGCTGTCAAGAACATGGGAAACGGATTATGCTTACAACAAATTTCCACAGGGTTCTAAAAATGTTTCTGTGGCTTTGAACTCCATTAGATACCCTGGAGATGAAGTGACTCCATTAATTGCTCCTAATTGGGTTTATGCAACTGCAGAGGATCTCCAAGATCCTGAAACGATTCAAGTAAATTTCAATATGAGTTGGAGTTTCAATGTGGAACCGAGTTACTCGTATTTGATCAGACTCCATTTCTGTGACATTGTGAGCAAAGTCCTCAACAGTTTGTACTTCAATGTCTACATCAATGGGATGATGGGTATTGCAGATCTTGATCTTTCTCAACTCACTGGTGATCTTTCCACTCCATACTATAGAGACCTTGTTCTCAATGCCTCTGACATCAAGAACAACACCATCATGATTCAGGTTGGTCCATCAAATTTGGATTCAGGGCTTCAAGATGCGATTCTGAATGGAGTGGAAATCATGAAGATGAGTAACGATGCACAAAGCTTGGATGGTTTGTTTTCAGTGGATGGGACATACATGGGAGGCTCAAGATTTAGCACAATGAAGATTGTAGCCGCTGTAGCACTTGGAATGGCAGCCATTGCCATTGTATTTGTTGGAATAATGTTCTTGAGATGGCAAAAAAGGCCTCAGGGATGGGAGAAGAGAAACAGTTTCTCTTCATGGCTTCTTCCTTTGAATTCAACTCACACTGCCAGTTTCTTCTCTTCAAAAAGCAGCTCCAGAAGATCATCAACCGTTTTTAGCTCTCGAAGGAGCAGGACTGGCCTCTCAGCCATTTACTCCAATGTCGGTCTTGGCCGTTTCTTCTCCCTCAACGAGTTACAGGCTGCTACCCAGAACTTCGAGGAGAAAGCAGTGATCGGCGTTGGTGGATTCGGCAAAGTCTACGTCGGAGCGTTAGAAGATGGAACCAAAGTCGCCATTAAACGTGGAAACCCCAGTTCTGATCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTGTCCAAACTCCGCCATCGCCATCTCGTTTCTCTAATCGGTTACTGCGACGAGCAATCCGAGATGATTCTGGTTTACGAGTACATGGCCAATGGCCCATTTCGCGACCACTTGTATGGCTCTAATCTCCCTCCTTTGTCTTGGAAACAGAGGCTCGAAATCTGTATCGGCGCTGCCCGTGGCCTTCACTATCTCCACACTGGTGCGGCTCAGGGCATAATCCACCGTGATGTCAAGACCACTAACATTCTTCTTGATGAAAATTTTGTTGCCAAAGTTGCTGATTTTGGGCTTTCCAAAGCTGCGCCATCTTTGGAACAGACCCATGTGAGCACTGCAGTCAAGGGAAGTTTTGGTTACCTTGATCCTGAGTACTTCAGAAGACAGCAACTCACTGAGAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGTGCAAGACAAGTCATCAATCCCACATTGCCGCGTGAGCAGGTAAATTTGGCGGAGTGGGCAATGCAAAATTACAGAAAAGGAAAGCTAGAGAAGATAATTGATCCTCAAATTAGCAGCTCAATTGTAGAGGGGTCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGTTGATAGACCAAGCATGGGAGATGTGCTATGGAACTTAGAATACGCTTTGCAGCTACAAGAGGCTGTATCAGAGCTCGAGGACCCTGAGGAAGACAAATGCGAAGGCCTTGTGGCTTTAGACAAACCAAATGACAATGAACCAAAAGGAGGTACAAGTGCTTCTGTAAGTGATGATATTTCTGAAGTTTCAGTTAGTGCTCCTTTGTTTTCAGAAGTTCAAAATTTTCAGGGAAGATAA 3945 45.27 MAMPEPSSSLPVDSLGDIDDYIWANEGEDQLPWDMFRHVFEFVQNGNQAFKDNHFEEAIKYYSRANNIKPGDPVILNNRSAAYIRISQFLKDRPPAASEYRPLNGLDPTVHAELALKDAEKLMDLCGKSVKPYILKANALILLEKYDMAKDIMLSGLQIDPLSNPLQASLQRLERIVASMTGRGRHGLQDRSDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCAVSVTLSNIIQKNFPEEYAERKSEHDGSTNFGVDLMPLFVMDVVIPCQKFPLHIFEPRYRLMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRIIRSWDQDGYRVAEVEWVNDITPPEGTIERAELQEMTINAAEYAQSWIRRAKEASRRACYPFKSEAPGKIGTSTNDRYKRALPPPLPAVAMGGEFSRAPNPRIPFSSLLLLLLSLCLSAALSAAQTPSFRSFSPRDAYLINCGSPAQTRLDDGRIFKSDRESTSLLSTEEDVQISVDSIPSNAAVSPLSSWSLPLFRSARIFPDDSTYTFFISQPGRHWIRLYFYPLPHPNYNLSDSVFTVTTDTFVLLHDFSIKPNPKIVFKEYLINITTDRFSLQFKPKKNSFAFVNAIEIVSAPDPLFSDSANSVSPVGFFNGLSNIALQICYRVNVGGPELVPKNDTLSRTWETDYAYNKFPQGSKNVSVALNSIRYPGDEVTPLIAPNWVYATAEDLQDPETIQVNFNMSWSFNVEPSYSYLIRLHFCDIVSKVLNSLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNTIMIQVGPSNLDSGLQDAILNGVEIMKMSNDAQSLDGLFSVDGTYMGGSRFSTMKIVAAVALGMAAIAIVFVGIMFLRWQKRPQGWEKRNSFSSWLLPLNSTHTASFFSSKSSSRRSSTVFSSRRSRTGLSAIYSNVGLGRFFSLNELQAATQNFEEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAMQNYRKGKLEKIIDPQISSSIVEGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPEEDKCEGLVALDKPNDNEPKGGTSASVSDDISEVSVSAPLFSEVQNFQGR 1314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29289936 29306339 - ClCG06G015990.2 Cla06g01573 275765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01573 1314 SUPERFAMILY PUA domain-like 281 392 IPR015947 -
Cla06g01573 1314 Gene3D Tetratricopeptide repeat domain 37 183 IPR011990 GO:0005515
Cla06g01573 1314 ProSiteProfiles Protein kinase domain profile. 978 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01573 1314 Gene3D - 668 854 - -
Cla06g01573 1314 Gene3D - 484 645 - -
Cla06g01573 1314 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Cla06g01573 1314 ProSitePatterns Protein kinases ATP-binding region signature. 984 1006 IPR017441 GO:0005524
Cla06g01573 1314 SMART serkin_6 978 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01573 1314 SUPERFAMILY Protein kinase-like (PK-like) 952 1249 IPR011009 -
Cla06g01573 1314 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Cla06g01573 1314 Gene3D Phosphorylase Kinase; domain 1 940 1053 - -
Cla06g01573 1314 CDD STKc_IRAK 984 1249 - -
Cla06g01573 1314 Pfam Malectin-like domain 488 851 IPR024788 -
Cla06g01573 1314 Pfam Protein tyrosine and serine/threonine kinase 981 1205 IPR001245 GO:0004672|GO:0006468
Cla06g01573 1314 PANTHER OS03G0759600 PROTEIN 474 1292 - -
Cla06g01573 1314 SMART ring_2 197 234 IPR001841 -
Cla06g01573 1314 CDD RING2-HC_LONFs 194 235 - -
Cla06g01573 1314 PANTHER OS07G0166700 PROTEIN 474 1292 IPR045272 GO:0004714|GO:0006468
Cla06g01573 1314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1098 1110 IPR008271 GO:0004672|GO:0006468
Cla06g01573 1314 Gene3D - 280 309 IPR046336 -
Cla06g01573 1314 Gene3D - 310 368 IPR046336 -
Cla06g01573 1314 MobiDBLite consensus disorder prediction 1274 1295 - -
Cla06g01573 1314 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Cla06g01573 1314 SUPERFAMILY RING/U-box 189 259 - -
Cla06g01573 1314 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Cla06g01573 1314 SUPERFAMILY TPR-like 41 174 IPR011990 GO:0005515
Cla06g01573 1314 Gene3D Transferase(Phosphotransferase) domain 1 1054 1271 - -
Cla06g01573 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 277 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02462 Cla-Chr1:38303940 Cla06g01573 Cla-Chr6:29289936 0 dispersed
Cla02g02009 Cla-Chr2:35069904 Cla06g01573 Cla-Chr6:29289936 0 dispersed
Cla05g00335 Cla-Chr5:3038165 Cla06g01573 Cla-Chr6:29289936 1.05E-06 dispersed
Cla05g00907 Cla-Chr5:9007152 Cla06g01573 Cla-Chr6:29289936 0 dispersed
Cla05g01382 Cla-Chr5:18586338 Cla06g01573 Cla-Chr6:29289936 7.22E-16 dispersed
Cla05g01906 Cla-Chr5:30909335 Cla06g01573 Cla-Chr6:29289936 7.39E-08 dispersed
Cla06g01154 Cla-Chr6:24605286 Cla06g01573 Cla-Chr6:29289936 2.02E-64 dispersed
Cla06g01573 Cla-Chr6:29289936 Cla09g00209 Cla-Chr9:2085156 0 dispersed
Cla11g00064 Cla-Chr11:840144 Cla06g01573 Cla-Chr6:29289936 3.65E-06 dispersed
Cla06g01573 Cla-Chr6:29289936 Cla11g01796 Cla-Chr11:31629607 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80658 PF12819 Malectin_like 7.10E-35 CL0202 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01573 - - csv:101204351 2296.93