Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01579 ATGAGTAGTAAGACTTCCTCGAAACCGGCGGTGCCGACGTCCTCAATGGCGTCGACTATCAAATCCTACTCCGTGCCTCTAATTCTCTTTTCCGTAGCTGTATTTTATCAGCTTGTTGTTATTCCTATCTCCTTCCCTACTTCTCACTACGACGTTTTAGGAATTAAGAGGTATAGTTCCGTTGATGAAGTGAAAGAAGCATACGGAAAGCTCTCGATCAAGTGGGAGTCAGGAATGGAAATTCCGCAGGCCGTCGATTTTGTAGAGATTCAATATGCTTATGAGTTGCTAAAAAATAATTTATGGAAACGCAACTACGATCTTTTTGGCATCGATGAACAACGGGGTGTTCTTGAAAACGTCAAAGTGCAATATGCCAGGGAAAAGTTTTCGGATATAAGTCTCCCATTGTTAGATGAAGTTCCATTAAATACTGAAGATCACAACCTTAATTTCATAACATTCAATGATGTTCAATCCATATTTAATGATGATAAGCCATCACTAATTATGTTGTATTCATTTGGAAGCAAACTCTGCGTTCAATTTTCTGATGTATGGAAACAAATTGTTGCTTCGCTGGATGGAGTTGCTTATACTGCAGTAGTGGAGCTTGGGGAAGCTCAACTTGCTGCTTACCTTGCAGAGAAAAAGCCTACTGGACAGCCATTCTTCAGGAATGGACTACCATCATTTGTGGCCTTTCCTCCTGGTTGTAAATCAACTGATTGCATTAATAGGTTCAATGGAAAGCTTTCTTTTGATGATATTACAGATTGGTTTGCAACAACCGTACTGTATCTACCTCGAATCCTTTACTACTCAAAGGACACATTGGTCAAAGTTATTATTTTCTCAGAAACTGGAGAACGTGCTGCACCATTCATCCGCCAAACTGCAAAGAACTACTGGGATTCCATTTCATTTGCCTTTGTGCTATGGCGAGAAGAGGATTCATCTATCTGGTTGGATGCGTTTGGGGTGGAGCTTGCACCTGCTATGGTATTCTTGAAAGATCCAGGAGTGAAGCCTATTGTGTACCATGGCATGTCACTTCTTTTTCCATGGCTTATTTCATTTGTGTGCTTTTTCCACTTTATTCTATGCTCTGTGCATTGTTTGACTTATCAAAATGTGCACTTCTTGCCATCAGGCTCTGTCAATCGTTCCTCGTTTGTACAGCTCATTGAACAGAATAAGCAACAAGAACTTCCTCAATTAAGAAGTCGGACATCAATGGAGCTGGGATGTGATGCTCGTGGTTATTCTCGTGCTGGATCTGACACATTAACGTGGTACTGTGCGATTGTAGCTGGAAGGCTGGGTGCAGAACTCAACAAAATGCGTGAATATTCAGATGAGCAAAGTTCTGTCCTGGGGGTGGGGGGTGGAGTGAGTGCCTTGGTATCGTCCACCAACTTTGAGATGGAGTATAAATTTGAAATGACAATGCGCAGGGTTAAAGAAACTTTAACCAGCAATAGTGAAGCTTATGGAGCCGATGAAAACCCAAAGATATCTCCAGCTGTAGTCGCACTTAAAAGCAAACGTTTGTCCTTCACTTGGCTTGACGGTGAAGCCCAGAAGAAATATTGTTTCTTTTACATTAGCTCTGAATCTAGCTATGAAACTTGTGGACCAATGAGAGATCTCAGTGATGTGCCTCGATTATTTATTGTGCGGTACAAAAGAGATGTGACTGAAGCTAAGGAGATGAAGCCAAGAAGTATGTTTGATACATCATCCGATGATCTGGATCTTGCCGCACAGCTCGTGGCTCTTTACAATGGTTCATCTGAAATTTCGGAGAGAGTGAAGGCTCCTGAACTTGTTCATGAAAATCCGGAGCCTATGAGTTTTGGAAGTGCTGGGAGTAGTTTTATTACCAATGTGTTGAAGTGGATTGAGCACATCAAAGTGGGAATCTATGACCGTCTAGACGACCCAAGGATTGGTCCAGTCTTGTTTCTTGCTTCATTTTTGTCTTTCGGTACAATTTGGCTACGGAGATCTCAACCCACTCCCCCATCTCAACCAGTTAGGCAACCAGAACTCCCAAATGAATCCACTCAACCAAGTCAACCAACTACTAAGGAAGGAAGCAAACCTAGAAGAAGAAACCGTGTGAGAACTGCATCAAATGCTGACATACCTCCTTCCATCACTGATTTTGAGCCTCCAAATGCTTATCAGATGCATCTTTCGGGCTCTGATTCCGAATAG 2223 42.2 MSSKTSSKPAVPTSSMASTIKSYSVPLILFSVAVFYQLVVIPISFPTSHYDVLGIKRYSSVDEVKEAYGKLSIKWESGMEIPQAVDFVEIQYAYELLKNNLWKRNYDLFGIDEQRGVLENVKVQYAREKFSDISLPLLDEVPLNTEDHNLNFITFNDVQSIFNDDKPSLIMLYSFGSKLCVQFSDVWKQIVASLDGVAYTAVVELGEAQLAAYLAEKKPTGQPFFRNGLPSFVAFPPGCKSTDCINRFNGKLSFDDITDWFATTVLYLPRILYYSKDTLVKVIIFSETGERAAPFIRQTAKNYWDSISFAFVLWREEDSSIWLDAFGVELAPAMVFLKDPGVKPIVYHGMSLLFPWLISFVCFFHFILCSVHCLTYQNVHFLPSGSVNRSSFVQLIEQNKQQELPQLRSRTSMELGCDARGYSRAGSDTLTWYCAIVAGRLGAELNKMREYSDEQSSVLGVGGGVSALVSSTNFEMEYKFEMTMRRVKETLTSNSEAYGADENPKISPAVVALKSKRLSFTWLDGEAQKKYCFFYISSESSYETCGPMRDLSDVPRLFIVRYKRDVTEAKEMKPRSMFDTSSDDLDLAAQLVALYNGSSEISERVKAPELVHENPEPMSFGSAGSSFITNVLKWIEHIKVGIYDRLDDPRIGPVLFLASFLSFGTIWLRRSQPTPPSQPVRQPELPNESTQPSQPTTKEGSKPRRRNRVRTASNADIPPSITDFEPPNAYQMHLSGSDSE 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29336146 29349289 - ClCG06G016050.2 Cla06g01579 275771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01579 740 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 29 739 - -
Cla06g01579 740 MobiDBLite consensus disorder prediction 672 740 - -
Cla06g01579 740 Gene3D DnaJ domain 45 125 IPR036869 -
Cla06g01579 740 MobiDBLite consensus disorder prediction 683 698 - -
Cla06g01579 740 SUPERFAMILY Thioredoxin-like 147 264 IPR036249 -
Cla06g01579 740 SMART dnaj_3 47 102 IPR001623 -
Cla06g01579 740 ProSiteProfiles dnaJ domain profile. 48 110 IPR001623 -
Cla06g01579 740 Pfam DnaJ domain 49 107 IPR001623 -
Cla06g01579 740 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 29 739 - -
Cla06g01579 740 CDD DnaJ 49 99 IPR001623 -
Cla06g01579 740 SUPERFAMILY Chaperone J-domain 36 110 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01579 - - - csv:101203381 1141.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g573 . . . Bda15g00611 . . . . . . . Cma11g00134 . Car11g00162 Sed12g1961 . Cpe04g01489 Bhi02g00302 Tan09g2101 Cmetu10g1617 . Hepe09g0105 . . Cla06g01579 Cam06g1747 Cec06g1805 Cco06g1807 Clacu06g1713 Cmu06g1657 Cre06g2470 . . . Cone19ag0064 . . . . . . . . . . . . . . Cmo11g00178 . . . . . . . . . . . . . . . . . . . . Lsi06g01453 Csa01g00250 Chy02g02484 Cme02g01870
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011601 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01579 Cla_Chr06 FPKM 43.627163 41.213562 43.82103 39.659683 31.304094 33.078384 32.682838 59.137939 60.875805 60.015022