Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01586 ATGCCCCCACACATTTACTGTTTCTGTTCAGGTAGAATGGAGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAACAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACGGCAGCTCTGAGTACAGCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCATTGTCGTTACTGCTACGAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATATAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGTCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGATGTCCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGACGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGTATTTTTAGTTTGTGAGTTTGAAAATGTGGGGTTTGGTTTGAAGGTTCTGCTGTGTCAAAATTCAAAAGGCTGTATTGAGAGAAGTCTTGTAAATCCAGCTCTTTTGATAGCTACTCTACTTTTAGACACGAGTATAAAATTAAAATTTATGAATGTTGATATTGGAGAATACGAAGACCCGTCCACTCCAAAACTCCCGACCAATTTCCAGCCGTTAGATCGTGAAAATCTCGTAAATCAACCCTCAGATCTGAAGAGAAACCATTCAGGAGAGATGGCCACTGTCACTACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCCAGATTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTCCGGGCGACAATGGATTTGACCCACTGGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTTCGTACAAGCGGAGCTGGTGAATGGGCGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTTTGCCGGAGGTTTTCACGAAGATCGGAATTATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCGGGTGGGATTTTCAATCCCCTGAATTTTGCCCCCACTCTTGAAGCCAAAGAGAAGGAATTAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGATTCATTGTGCAACACAATGTGACAGGGAAGGGGCCATTTGACAACCTATTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 1797 48.53 MPPHIYCFCSGRMEFLGFLLVGLLLSLGCHSALGHNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDAKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRTVISNDVAPAGWSFVFLVCEFENVGFGLKVLLCQNSKGCIERSLVNPALLIATLLLDTSIKLKFMNVDIGEYEDPSTPKLPTNFQPLDRENLVNQPSDLKRNHSGEMATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29404223 29410247 + ClCG06G016130.2 Cla06g01586 275778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01586 598 Gene3D Chlorophyll a/b binding protein domain 409 588 - -
Cla06g01586 598 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 98 109 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Cla06g01586 598 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Cla06g01586 598 Gene3D - 169 256 IPR036749 -
Cla06g01586 598 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 171 IPR007112 -
Cla06g01586 598 SUPERFAMILY PHL pollen allergen 168 254 IPR036749 -
Cla06g01586 598 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Cla06g01586 598 SUPERFAMILY Chlorophyll a-b binding protein 399 595 - -
Cla06g01586 598 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Cla06g01586 598 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cla06g01586 598 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Cla06g01586 598 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Cla06g01586 598 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Cla06g01586 598 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Cla06g01586 598 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 347 598 IPR001344 GO:0009765|GO:0016020
Cla06g01586 598 SUPERFAMILY Barwin-like endoglucanases 40 189 IPR036908 -
Cla06g01586 598 Pfam Chlorophyll A-B binding protein 409 568 IPR022796 -
Cla06g01586 598 SMART dpbb_1 76 161 IPR007112 -
Cla06g01586 598 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 254 IPR007117 -
Cla06g01586 598 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 347 598 - -
Cla06g01586 598 Gene3D - 28 167 IPR036908 -
Cla06g01586 598 Pfam Lytic transglycolase 76 161 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01190 Cla06g01586 CCT
Cla04g01190 Cla06g01586 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01586 Cla-Chr6:29404223 Cla11g00693 Cla-Chr11:8177039 1.42E-125 dispersed
Cla08g01570 Cla-Chr8:28351845 Cla06g01586 Cla-Chr6:29404223 1.33E-62 dispersed
Cla09g02009 Cla-Chr9:37651864 Cla06g01586 Cla-Chr6:29404223 4.14E-44 dispersed
Cla11g01337 Cla-Chr11:26824719 Cla06g01586 Cla-Chr6:29404223 2.88E-73 transposed
Cla04g01190 Cla-Chr4:27061578 Cla06g01586 Cla-Chr6:29404223 9.41E-74 wgd
Cla05g02431 Cla-Chr5:35815273 Cla06g01586 Cla-Chr6:29404223 4.40E-130 wgd
Cla06g01586 Cla-Chr6:29404223 Cla09g01772 Cla-Chr9:35114897 3.79E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01586 K08910 - csv:101222701 496.508