Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01588 ATGCTGGAAATTAAAGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCAACTTCCGGCCGATTGTGAGGTTTCGTTGATCGAAAGCGATGATTCCGTTTCTACTTCCGATAAAGAAAGCGGAGATGGAGCACTACAAAAGGTTATCCTTATCTGCGACTTTTGGGGTTCCCAATGGATATTAATTTGGTTTTCATGTGTGGAGTTGGGGAAAATTGAATTCCGCAATTCGTTTTGGATTCAAATAAGGAACCTTGTGAAACGGCAAATCGCTACAAGTTTTGCGATAATCAAGCTAGAGTTCGCAGTTCTTATTGTTTTTGCCATTTTCTTTGAAATATCCAATTCCACGCAATTCGTGGATGTAGGAAAAGCCACTGAGAGTTTAGCTGCTAAAGATGGAACTCTTCATGATTCAGAGGATTCTGCATGTGTACAAACAGCCAATGAGGCGCACATGAATCCAGAAGTGGTATCGATGGATGAAAATGACAAATTCGCAACAAGCAAACCCGAGAAAGAACAGAATGATGCACCCAACTCAAAAGAGAAATTGAAGAAGCCGGACAAAATACTTCCATGCCCCCGCTGCAATAGTATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAACCAACCACGCCATTTCTGTAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATGAGGAATGTCCCCGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACAGATTACAATCTCTGAGGCTCTTCAAGCTGCACAAATTGATATTCCTAATGGAGTCAACTGCCTAGCAACCAAAAGCAATGGGCGAGTCCTAAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGTCCACTGTCCTCAATCCGGCAGGAAGAAAGGTCTTGAATGGGACTAGGAATGAATTTCATAGACTCGATGACCAAGGAATTAAAGCACCTTGCAAGGGTGGGGAAACTGGGGATGATTGTTCCAGTGCATCTTCAGTGACGATGTCGAGTTCAATGGAGGAAGGAGCCAGGAGATGCCCTCAAGAACCACAGATGCAGAATATCAATGGTTTCCCTCCTCAAATTCCATATCTCCCTGGTGTTCCTTGGCCTTGTTCATGGAATCCACCAATGCCTCCACCGGCCTTCTGCCCTCCTGGAGTTCCTTTATCATTCTATCCTGCGACATACTGGAGCTGTGGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCCCTCCACAACCCTGTTCACCAAATTCTGGTGCAAATTCACCTACACTGGGGAAGCATTCCAGAGATGGTGACAAACTCCAGGCTGATAATTCTGAGAATGAAGAACCTCCAAAACAGAAAAACGGATCTGTTTTGATTCCCAAAACTTTGAGGATTGATGATCCGGATGAAGCCGCTAAAAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGACCTGTCTAAGGTCTTCCAATCAAAGGGTGATCAAAAGAATAGGGTTTCTGAAGTGTTATCACCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCATGAACGTTCGTGA 1614 43.74 MLEIKDPAIKIFGKEIQLPADCEVSLIESDDSVSTSDKESGDGALQKVILICDFWGSQWILIWFSCVELGKIEFRNSFWIQIRNLVKRQIATSFAIIKLEFAVLIVFAIFFEISNSTQFVDVGKATESLAAKDGTLHDSEDSACVQTANEAHMNPEVVSMDENDKFATSKPEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRQITISEALQAAQIDIPNGVNCLATKSNGRVLNFSVNAPVCESMSTVLNPAGRKVLNGTRNEFHRLDDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIPYLPGVPWPCSWNPPMPPPAFCPPGVPLSFYPATYWSCGVPGAWNIPWFPPQPCSPNSGANSPTLGKHSRDGDKLQADNSENEEPPKQKNGSVLIPKTLRIDDPDEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGDQKNRVSEVLSPVLQANPAALSRSLTFHERS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29416844 29419756 - ClCG06G016160.2 Cla06g01588 275780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01588 537 MobiDBLite consensus disorder prediction 437 455 - -
Cla06g01588 537 PANTHER CYCLIC DOF FACTOR 1 1 536 - -
Cla06g01588 537 Pfam Dof domain, zinc finger 189 246 IPR003851 GO:0003677|GO:0006355
Cla06g01588 537 MobiDBLite consensus disorder prediction 425 471 - -
Cla06g01588 537 ProSiteProfiles Zinc finger Dof-type profile. 192 246 IPR003851 GO:0003677|GO:0006355
Cla06g01588 537 ProSitePatterns Zinc finger Dof-type signature. 194 230 IPR003851 GO:0003677|GO:0006355
Cla06g01588 537 PANTHER CYCLIC DOF FACTOR 2 1 536 IPR045174 GO:0003700|GO:0006355
Cla06g01588 537 MobiDBLite consensus disorder prediction 165 187 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01194 Cla06g01588 CCT
Cla04g01194 Cla06g01588 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01588 Cla-Chr6:29416844 Cla10g01519 Cla-Chr10:30481283 9.32E-56 dispersed
Cla10g01453 Cla-Chr10:29720622 Cla06g01588 Cla-Chr6:29416844 8.59E-129 wgd
Cla04g01194 Cla-Chr4:27094213 Cla06g01588 Cla-Chr6:29416844 2.36E-127 wgd
Cla05g02435 Cla-Chr5:35837765 Cla06g01588 Cla-Chr6:29416844 1.02E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61326 PF02701 zf-Dof 3.00E-32 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01588 - - csv:101222224 805.053