Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01588 ATGCTGGAAATTAAAGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCAACTTCCGGCCGATTGTGAGGTTTCGTTGATCGAAAGCGATGATTCCGTTTCTACTTCCGATAAAGAAAGCGGAGATGGAGCACTACAAAAGGTTATCCTTATCTGCGACTTTTGGGGTTCCCAATGGATATTAATTTGGTTTTCATGTGTGGAGTTGGGGAAAATTGAATTCCGCAATTCGTTTTGGATTCAAATAAGGAACCTTGTGAAACGGCAAATCGCTACAAGTTTTGCGATAATCAAGCTAGAGTTCGCAGTTCTTATTGTTTTTGCCATTTTCTTTGAAATATCCAATTCCACGCAATTCGTGGATGTAGGAAAAGCCACTGAGAGTTTAGCTGCTAAAGATGGAACTCTTCATGATTCAGAGGATTCTGCATGTGTACAAACAGCCAATGAGGCGCACATGAATCCAGAAGTGGTATCGATGGATGAAAATGACAAATTCGCAACAAGCAAACCCGAGAAAGAACAGAATGATGCACCCAACTCAAAAGAGAAATTGAAGAAGCCGGACAAAATACTTCCATGCCCCCGCTGCAATAGTATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAACCAACCACGCCATTTCTGTAAAGCCTGTCAAAGATATTGGACTGAAGGCGGTACCATGAGGAATGTCCCCGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACAGATTACAATCTCTGAGGCTCTTCAAGCTGCACAAATTGATATTCCTAATGGAGTCAACTGCCTAGCAACCAAAAGCAATGGGCGAGTCCTAAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGTCCACTGTCCTCAATCCGGCAGGAAGAAAGGTCTTGAATGGGACTAGGAATGAATTTCATAGACTCGATGACCAAGGAATTAAAGCACCTTGCAAGGGTGGGGAAACTGGGGATGATTGTTCCAGTGCATCTTCAGTGACGATGTCGAGTTCAATGGAGGAAGGAGCCAGGAGATGCCCTCAAGAACCACAGATGCAGAATATCAATGGTTTCCCTCCTCAAATTCCATATCTCCCTGGTGTTCCTTGGCCTTGTTCATGGAATCCACCAATGCCTCCACCGGCCTTCTGCCCTCCTGGAGTTCCTTTATCATTCTATCCTGCGACATACTGGAGCTGTGGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCCCTCCACAACCCTGTTCACCAAATTCTGGTGCAAATTCACCTACACTGGGGAAGCATTCCAGAGATGGTGACAAACTCCAGGCTGATAATTCTGAGAATGAAGAACCTCCAAAACAGAAAAACGGATCTGTTTTGATTCCCAAAACTTTGAGGATTGATGATCCGGATGAAGCCGCTAAAAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCAATCAAAGCTGTTGACCTGTCTAAGGTCTTCCAATCAAAGGGTGATCAAAAGAATAGGGTTTCTGAAGTGTTATCACCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCATGAACGTTCGTGA 1614 43.74 MLEIKDPAIKIFGKEIQLPADCEVSLIESDDSVSTSDKESGDGALQKVILICDFWGSQWILIWFSCVELGKIEFRNSFWIQIRNLVKRQIATSFAIIKLEFAVLIVFAIFFEISNSTQFVDVGKATESLAAKDGTLHDSEDSACVQTANEAHMNPEVVSMDENDKFATSKPEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRQITISEALQAAQIDIPNGVNCLATKSNGRVLNFSVNAPVCESMSTVLNPAGRKVLNGTRNEFHRLDDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIPYLPGVPWPCSWNPPMPPPAFCPPGVPLSFYPATYWSCGVPGAWNIPWFPPQPCSPNSGANSPTLGKHSRDGDKLQADNSENEEPPKQKNGSVLIPKTLRIDDPDEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGDQKNRVSEVLSPVLQANPAALSRSLTFHERS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29416844 29419756 - ClCG06G016160.2 Cla06g01588 275780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01588 537 MobiDBLite consensus disorder prediction 437 455 - -
Cla06g01588 537 PANTHER CYCLIC DOF FACTOR 1 1 536 - -
Cla06g01588 537 Pfam Dof domain, zinc finger 189 246 IPR003851 GO:0003677|GO:0006355
Cla06g01588 537 MobiDBLite consensus disorder prediction 425 471 - -
Cla06g01588 537 ProSiteProfiles Zinc finger Dof-type profile. 192 246 IPR003851 GO:0003677|GO:0006355
Cla06g01588 537 ProSitePatterns Zinc finger Dof-type signature. 194 230 IPR003851 GO:0003677|GO:0006355
Cla06g01588 537 PANTHER CYCLIC DOF FACTOR 2 1 536 IPR045174 GO:0003700|GO:0006355
Cla06g01588 537 MobiDBLite consensus disorder prediction 165 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01588 - - - csv:101222224 805.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01194 Cla06g01588 CCT
Cla04g01194 Cla06g01588 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01588 Cla-Chr6:29416844 Cla10g01519 Cla-Chr10:30481283 9.32E-56 dispersed
Cla10g01453 Cla-Chr10:29720622 Cla06g01588 Cla-Chr6:29416844 8.59E-129 wgd
Cla04g01194 Cla-Chr4:27094213 Cla06g01588 Cla-Chr6:29416844 2.36E-127 wgd
Cla05g02435 Cla-Chr5:35837765 Cla06g01588 Cla-Chr6:29416844 1.02E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 8.1e-45 177.2
Cla01g02318 CCT 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.8e-40 160.6
Cla01g00159 . 17 104 C2C2-Dof Transcription Factor Family AT1G64620 75.8 7.3e-37 151.8
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.5e-43 172.2
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.1e-38 156.8
Cla03g00153 CCT,ECH 93 167 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.2e-37 152.1
Cla06g01588 CCT,ECH 185 536 C2C2-Dof Transcription Factor Family AT3G47500 53.4 6.1e-89 325.1
Cla01g00159 . 17 102 C2C2-Dof Transcription Factor Family AT4G24060 79.2 9.9e-39 157.9
Cla10g01453 . 212 591 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.8e-81 299.7
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.4e-39 161.0
Cla03g00153 CCT,ECH 94 167 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.7e-38 155.6
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.4e-36 151.0
Cla10g02000 CCT,ECH 117 199 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.0e-37 153.7
Cla02g01976 CCT,ECH 195 343 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.9e-37 152.1
Cla04g00818 CCT,ECH 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.3e-36 151.0
Cla06g01522 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.3 1.5e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61326 PF02701 zf-Dof 3.00E-32 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01588 Cla_Chr06 FPKM 1.716989 1.785934 1.673139 1.910334 4.803755 4.961129 4.729842 3.247536 3.141232 4.038419