Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01590 ATGGCCTCCGTAGCTCTCAAAACCTTCACCGGCCTCCGCCAATCCTCGACGGAGAAGCCCCATTTCGTCACCCAAACGAAGGCCAACCCGAACCCCCAATTTCGGCGCCGATTTTATGTCGCCGCTGCTAAAACCAGCCCTAAAATCGCCGGCCGGAACCTCAGAGTCGCGGTGGTCGGCGGCGGTCCCGCTGGAGGATCGGCAGCCGAAACTCTCGCCAGAGGCGGCGTTGAGACTTTCTTGTTCGAGAGGAAGCTCGACAACTGCAAGCCCTGCGGTGGTGCGATTCCGCTGTGTATGGTCGGCGAGTTCGATCTCCCGTTGGACCTGATTGACCGTCGTGTCACGAAGATGAAGATGATCTCTCCATCGAACGTCGCCGTTGACATTGGCCGAACCTTAAAACCTCACGAGTACATTGGGATGGTTCGGCGAGAGGTTCTGGACGCGTATCTTCGCAATCGAGCCGCTGAGAATGGGGCTAATGTGATTAATGGCTTGGTGATGAAATTGGAACTTCCGAAGGAACAAAATGCGCCGTATGTCCTTCATTACACTTCGTACGACGGGAAGAAAGGAGGCGTCGGGGAGAAGATGACATTGGAGGTCGACGCTGTGATCGGTGCCGACGGAGCTAATTCTCGCGTTGCCAAGGCCATTGACGCCGGCGATTACGATTACGCCATTGCATTTCAGGAGAGAATCAAAATCCCAGATGACAAAATGGTGTACTACGAGAATCTTGCAGAGATGTACGTAGGTGACGACGTGTCGCCGGATTTTTACGGGTGGGTTTTCCCGAAATGCGACCATGTTGCAGTCGGCACCGGCACGGTGACTCACAAGGCCGATATCAAGAAATTTCAAATAGCCACACGAAATAGGGCAAAGGATAAGATATTAGGAGGGAAGATCATCCGAGTTGAAGCACATCCAATCCCAGAACACCCTCGTCCACGTCGGCTAGCGGGAAGAGTGGCACTTGTCGGCGATGCAGCTGGGTATGTGACGAAATGCTCCGGTGAGGGCATATATTTCGCAGCGAAGAGTGGGAGAATGTGCGCAGAGGCAATCGTCGAGGGATCAGAAAATGGGAAAAGAATGGTGGAGGAATCAGACCTGAGGAAGTACTTAGAGAAATGGGATAAAACTTACTGGCCGACTTATAAGGTTCTGGATGTGTTGCAGAAGGTGTTTTACAGGTCGAATCCGGCGAGAGAAGCTTTTGTTGAGATGTGCGCCGACGAGTATGTGCAGAAGATGACATTCGACAGTTACTTGTATAAGAGAGTGGTGCCTGGGAATCCATTGGATGACTTGAAATTGGCTGTGAATACCATTGGGAGCTTGGTGAGAGCTAATGCTCTGAAGAGGGAGATGGAGAAAAATTATAATATGTCTATAATGACATTGGAAAGTGGAGAATCAGGACCGTTGAAAGGAAGAAGAGAATTTCTCGAGAATATGGAGAAGTCAGTGATGGGTTCAATGTTGATTCATTCTTCAGCTTGTTTTGGTTGTTTCTTTAATACCCTTTTGGTTAAAATGTGTGGTTTTCGCAGATCGATTTCAAATTGCTCTAGATCTAACTGCTGCCTTATTTGGTTGATTTTGAAGCTAGTGGTTAGGGGATTTAATCTCTGGAAATTTATACCTGAATGGATGGTTGAGATATTTGTTTGTGTTCCCTTTGTAAATGAGAACAAAAAATGTTGGGCCACAACTTACATAGACAATCGGAGAAGAAATCCAAGGGGAAGGGATCTCACCATCACTAAATCTGAATTGTCTTCTTTTCTTTGTGGACATCTTGTTGATCTGTATGGAACACACTTGTTGAAGTTGGAGCAGTTTCTTGAGTCAGATATGGCAGCAACGTCAGCAACTATTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAACTCAACTCATTTTCCCAATCAAAGTCTGCTAGCTTAAGAATCAATTCACAAGATACTCTTCAGAGCTTTTGTGGCCTCAAGGCAGCTTCATCTCTTCATTGTAACTCAGAGTCATCTTTCCTAGGGAAACAGAGCAGTGTTGCCCTATGGCGTTGTCTTGCTCCGTCAGCTCAAAGAGTGAACCAGAATGTATGCAAAAATCTTCAACCTCAAGCTTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTTTGGCACTTCTCATCAAGATGTCGCCATTAGTTGCCACCCTAAACCTTTATGATATTGCAAATGTCAAGGGTGTTGCTGCTGATATTAGTCACTGCAACACTCCCTCAAAAGTTCAGGATTTCACTGGACCTTCTGAATTAGCCAATGCTTTAAAAGGTGTGGATGTTGTTGTCATACCTGCTGGGGTTCCGAGAAAGCCTGGTATGACTCGTGATGACCTCTTCAACATAAATGCCGGCATAGTGAAAAGTTTGGTCGAGGCGGTTGCTGATAATTGTCCCGATGCTTTCATCCATATCATTAGCAACCCTGTGAACTCAACTGTGCCAATAGCAGCAGAAGTTCTAAAGCAGAAAGGCGTGTATGATCCAAAGAAGCTTTTTGGGGTTACTACATTGGATGTTGTTCGGGCAAACACCTTCGTTGCTGAAAAGAAGAACCTTAAACTGATCGATGTTGATGTCCCAGTTGTTGGGGGACATGCAGGAATAACAATTCTTCCTTTGCTATCAAAGACAAGACCTTCAGTGAGTTTTACAGATGAACAAATTCAAGAACTGACTGTTAGGATTCAAAATGCGGGAACCGAAGTTGTGGAAGCGAAGGCAGGGGCAGGATCTGCTACCCTTTCAATGGCATATGCTGCAGCAAGATTTGTCGAATCATCTCTTCGTGCTTTGGACGGAGATAGTGATGTATATGAGTGCACTTTTGTGCAGTCTGATCTAACTGAGCTTCCCTTCTTTGCATCGAGGGTTAAGCTCGGGAGGAAAGGAATTGAAGCCTTCGTAACGTCTGATCTCCAGGGTTTATCTGAGTACGAGCAGAAGGCTCTTGAAGCTCTAAAGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAAAAGCAAGCTGTGGCTGCTTAA 3105 46.57 MASVALKTFTGLRQSSTEKPHFVTQTKANPNPQFRRRFYVAAAKTSPKIAGRNLRVAVVGGGPAGGSAAETLARGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRNRAAENGANVINGLVMKLELPKEQNAPYVLHYTSYDGKKGGVGEKMTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLDDLKLAVNTIGSLVRANALKREMEKNYNMSIMTLESGESGPLKGRREFLENMEKSVMGSMLIHSSACFGCFFNTLLVKMCGFRRSISNCSRSNCCLIWLILKLVVRGFNLWKFIPEWMVEIFVCVPFVNENKKCWATTYIDNRRRNPRGRDLTITKSELSSFLCGHLVDLYGTHLLKLEQFLESDMAATSATILSIGATASLNTKLNSFSQSKSASLRINSQDTLQSFCGLKAASSLHCNSESSFLGKQSSVALWRCLAPSAQRVNQNVCKNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVATLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELANALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEQIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLSEYEQKALEALKPELKASIEKGIAFTQKQAVAA 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29436422 29442496 + ClCG06G016180.2 Cla06g01590 275782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01590 1034 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 861 1026 IPR022383 GO:0016616
Cla06g01590 1034 SUPERFAMILY FAD/NAD(P)-binding domain 54 436 IPR036188 -
Cla06g01590 1034 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 - -
Cla06g01590 1034 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 323 338 - -
Cla06g01590 1034 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Cla06g01590 1034 ProSitePatterns Malate dehydrogenase active site signature. 860 872 IPR001252 GO:0006108|GO:0016615
Cla06g01590 1034 TIGRFAM GG-red-SF: geranylgeranyl reductase family 56 358 IPR011777 GO:0016628
Cla06g01590 1034 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 709 860 IPR036291 -
Cla06g01590 1034 TIGRFAM ChlP: geranylgeranyl reductase 54 452 IPR011774 GO:0045550
Cla06g01590 1034 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 717 1027 IPR010097 GO:0006099|GO:0030060
Cla06g01590 1034 TIGRFAM BchP-ChlP: geranylgeranyl reductase 55 452 IPR010253 GO:0015979|GO:0015995|GO:0045550
Cla06g01590 1034 Gene3D - 714 860 - -
Cla06g01590 1034 Gene3D - 861 1032 IPR015955 GO:0003824|GO:0016616
Cla06g01590 1034 Pfam Glucose inhibited division protein A 56 90 IPR040131 -
Cla06g01590 1034 Pfam lactate/malate dehydrogenase, NAD binding domain 717 859 IPR001236 GO:0016491
Cla06g01590 1034 Gene3D - 54 477 IPR036188 -
Cla06g01590 1034 CDD MDH_glyoxysomal_mitochondrial 716 1026 IPR010097 GO:0006099|GO:0030060
Cla06g01590 1034 PANTHER MALATE AND LACTATE DEHYDROGENASE 647 1034 - -
Cla06g01590 1034 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 647 1034 - -
Cla06g01590 1034 SUPERFAMILY LDH C-terminal domain-like 860 1027 IPR015955 GO:0003824|GO:0016616
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01590 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - csv:101221755 905.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00557 Cla-Chr2:5887259 Cla06g01590 Cla-Chr6:29436422 0 dispersed
Cla02g02349 Cla-Chr2:38557070 Cla06g01590 Cla-Chr6:29436422 0 dispersed
Cla06g00666 Cla-Chr6:8447340 Cla06g01590 Cla-Chr6:29436422 9.64E-10 dispersed
Cla06g01590 Cla-Chr6:29436422 Cla07g00948 Cla-Chr7:25669316 7.02E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01590 Cla_Chr06 FPKM 16.083941 17.473042 7.852938 8.009055 12.681253 12.219892 12.235076 8.496259 7.591959 7.22462