Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01591 ATGGACGCCACTTGGGGGCCGAAGTGTGAAGTAATGGTCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTACCTATAAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGCTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATCTTCAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCGGGACGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATAGAGCCCCTGATTTCTCTCATAAAATCATGCACCCAAAAATCCCAATTCCTCCAAATCCATGCCCACATCATCCGCACTTCTTCCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCACCGCCTCCGCCCCTTTTCGTGATTTGGACTATTCTCGACGATTCTTCTCTCTTCTGACTAACCCATTTGTTCCTCATTACAATGCGATGTTGAGAGCCTACTCTTTGAGCCATTCACCACTTGAAGCATTGTACGTGTACAGAGATATGGAGAGGCAAGGAGTTCGTGCTGATCCTTTGTCTTCTTCCTTTGCTGTTAAGTCGTGTATAAGATTGCTTTCATTAGTTAGTGGGGTTCAGATTCACGCGAGGATTTTTAGAAATGGGCATCAATTGGATAGTCTTTTGCTCACCTCCATGATGGACCTGTATTCTCGTTGCGGCAAAATTGAGGATGCGTGCAAATTGTTCGACGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCTTCTCTAACTCGAAATAAACGAACTAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACATATCTGTGCCAACCTGATAAAGTTACTTGTTTACTTCTCCTCCAAGCCTGTGCAGACTTGAATGCATTGGAAATTGGTGAAAGGATTCATAGTTATGTTCAACAGCACGGTTATAATACTGAGAGTAATTTGTGTAATTCGCTCATAACGATGTATTCGCGGTGTGGGCGTGTGGATAAGGCCTATGAAGTGTTTGATAAAATGCCAGAGAAAAATGTTGTTTCATGGAGTGCGATGATTTCCGGGTTATCAATGAATGGGCACGGGAGAGAAGCTATTGAAGCGTTTTGGGAGATGCAGAAGAAGGGTGTGGAGCCTGATGATCATACATTCACCGCAGTTCTTTCTGCTTGTAGCCACTGTGGCCTGGTTGATGAAGGAATGGCTTTTTTTGATCGTATGAGACAGGAGTTCACGATAGTTCCCAACGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTAGAACACGCCTATCAGCTCGTAATGTCAATGGAGGTGAAACCAGATGCGACATTGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCATTATTGAACATTTGATTGAACTCAAATCTCAAGAAGCTGGAGATTATGTGTTGTTGCTGAACATTTATTCTTCGGCTGGCAACTGGGACAAGATAACTGAATTGAGGAAATTTATGAAGGAGAAGGGTATTTATACTACACCTGGGTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCTATGAAGGACAAGATCTACGAGCAGCTGGATGAGATCAACAAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAGATTAAAGGCAGAAGATAAGGGGTATGCGCTTTCTAACCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACTCCGCCAGGAAGAACCATCAGAGTGGCAAATAACCTTCGGACTTGCATGGATTGTCATAACTTTGCTAAGTATATCTCAAGTGTTTATAACAGAAAAGTGGTTGTTAGGGACCGAAGTCGGTTCCATCATTTTCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG 2583 41.39 MDATWGPKCEVMVFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQCFSSSTTIHDRDEEDDEEMKYLLSDCSFSSTNCTLFIEPLISLIKSCTQKSQFLQIHAHIIRTSSIQDPIVSLRFLTRTASAPFRDLDYSRRFFSLLTNPFVPHYNAMLRAYSLSHSPLEALYVYRDMERQGVRADPLSSSFAVKSCIRLLSLVSGVQIHARIFRNGHQLDSLLLTSMMDLYSRCGKIEDACKLFDEIPQRDVVAWNVLISSLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEIGERIHSYVQQHGYNTESNLCNSLITMYSRCGRVDKAYEVFDKMPEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKKGVEPDDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFTIVPNVHHYGCMVDLLGRAGMLEHAYQLVMSMEVKPDATLWRTLLGACRIHGHANLGERIIEHLIELKSQEAGDYVLLLNIYSSAGNWDKITELRKFMKEKGIYTTPGCTTIELNGVVHEFAVDDISHPMKDKIYEQLDEINKQLKIAGYEAEISSELHRLKAEDKGYALSNHSEKLAIAFGVLATPPGRTIRVANNLRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFREGRCSCNDYW 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29442749 29448243 - ClCG06G016200.1 Cla06g01591 275783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01591 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 552 IPR002885 -
Cla06g01591 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Cla06g01591 860 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Cla06g01591 860 TIGRFAM PPR: pentatricopeptide repeat domain 525 554 IPR002885 -
Cla06g01591 860 TIGRFAM PPR: pentatricopeptide repeat domain 353 384 IPR002885 -
Cla06g01591 860 TIGRFAM PPR: pentatricopeptide repeat domain 424 452 IPR002885 -
Cla06g01591 860 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Cla06g01591 860 TIGRFAM PPR: pentatricopeptide repeat domain 452 479 IPR002885 -
Cla06g01591 860 Pfam PPR repeat family 449 499 IPR002885 -
Cla06g01591 860 Pfam PPR repeat family 552 600 IPR002885 -
Cla06g01591 860 Gene3D Tetratricopeptide repeat domain 599 762 IPR011990 GO:0005515
Cla06g01591 860 Gene3D Tetratricopeptide repeat domain 346 505 IPR011990 GO:0005515
Cla06g01591 860 MobiDBLite consensus disorder prediction 112 133 - -
Cla06g01591 860 Pfam E motif 672 732 IPR046848 -
Cla06g01591 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Cla06g01591 860 MobiDBLite consensus disorder prediction 108 147 - -
Cla06g01591 860 Pfam DYW family of nucleic acid deaminases 768 860 IPR032867 GO:0008270
Cla06g01591 860 Gene3D Tetratricopeptide repeat domain 506 598 IPR011990 GO:0005515
Cla06g01591 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Cla06g01591 860 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 281 852 - -
Cla06g01591 860 PANTHER OS08G0434000 PROTEIN 281 852 - -
Cla06g01591 860 Coils Coil 184 204 - -
Cla06g01591 860 Pfam PPR repeat 627 652 IPR002885 -
Cla06g01591 860 Pfam PPR repeat 352 381 IPR002885 -
Cla06g01591 860 Pfam PPR repeat 527 549 IPR002885 -
Cla06g01591 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 618 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01591 - - - csv:105436340 1073.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00975 Cla-Chr5:9839757 Cla06g01591 Cla-Chr6:29442749 1.13E-11 dispersed
Cla06g01591 Cla-Chr6:29442749 Cla06g01081 Cla-Chr6:23432994 6.68E-64 dispersed
Cla08g00884 Cla-Chr8:21331660 Cla06g01591 Cla-Chr6:29442749 7.70E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006872 1 7 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 2 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01591 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.407127