Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01596 ATGGAAGGAGGTGATGAACTTCACCACCATCACCACCACCCTCACAACCACCACCATCATCGCCCCACCTTCCCATTTCAATTACTTGAAAAAAAAGATGACGATGCTGCCTCTTGCTCCACCTCTTCCTACCCTTCTCTCGCCATCTCCGCCGACACCACCACCACCACAACCACCGCGGTTGTCACTTCTACTGGAGAGCCCTCCAAGAAGCCACCTCCAAAGAGAACCTCCACCAAAGACCGTCACACAAAAGTCGACGGTCGTGGTCGTCGTATCCGAATGCCGGCCTTATGTGCAGCTAGGGTATTCCAACTCACTCGAGAATTAGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAGGCGGAACCCGCCGTGATTGCTGCCACTGGAACCGGTACCATCCCGGCTAATTTCACATCGCTCAACATCTCATTACGTAGCTCCGGCTCCAGTATGTCCGTCCCTTCACAGCTCCGATCCTCCTCTTATTACAACCCCAATTTCTCCCTTCACCAACAACGCCGAACCCTCTTCCCCGGATTCGGCCTTTCATCCGAAACTTCCTCCACCGCCCTCCTCAATTTCCAGTCCACCAACATCGGAAACTCTCTGCTCCAAGCCAAACCCGAACTCAGAGACACTACCTCTTCGTTAGACCTCTCCGAGGCGGCGGACGAAATCAGCATAGGGCGGAAGAGAAGGCCGTCGACAGAGCAGGAGTTGTCGTCCTCGTCGTCCCAGCATCAAATGGGAGGGTATCTGTTGCAGTCGAGTACAGGGACGATTCCGGCGAGCCACGGAGGAGCTCAGGTTCCGGCGAATTTTTGGATGCTTACGAATACGAATAACCAAGTGATGGGGGGTGATCCGATATGGACGTTTCCGTCGGTTAATAACAGCGGTTTGTACAGAGGAACGATGTCTAGTGGGTTACATTTCATGAACTTTCCGGCGCCGGTCGCGTTGGTTCCGGGTCAGCAATTCGGTTCCACCACCGGCGGAGGGAATAATAGTTCCAATGAGGGACACTTGAATATACTTGCAGGGCTAAATCCGTATCGGTCGGTGTCAAGCTCCGGCGTAATGGAACCACAAGGAAGTGGGTCGCACTCACATCACGGCGGCGGCGGAAGTAACGGCGGTGGGGATGATCGTCATGATACAACTAGCCACCACTCATAG 1197 54.39 MEGGDELHHHHHHPHNHHHHRPTFPFQLLEKKDDDAASCSTSSYPSLAISADTTTTTTTAVVTSTGEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSSYYNPNFSLHQQRRTLFPGFGLSSETSSTALLNFQSTNIGNSLLQAKPELRDTTSSLDLSEAADEISIGRKRRPSTEQELSSSSSQHQMGGYLLQSSTGTIPASHGGAQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSTTGGGNNSSNEGHLNILAGLNPYRSVSSSGVMEPQGSGSHSHHGGGGSNGGGDDRHDTTSHHS 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29505943 29507139 + ClCG06G016250.1 Cla06g01596 275788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01596 398 MobiDBLite consensus disorder prediction 73 91 - -
Cla06g01596 398 MobiDBLite consensus disorder prediction 360 379 - -
Cla06g01596 398 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
Cla06g01596 398 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 15 397 - -
Cla06g01596 398 MobiDBLite consensus disorder prediction 59 91 - -
Cla06g01596 398 MobiDBLite consensus disorder prediction 360 398 - -
Cla06g01596 398 MobiDBLite consensus disorder prediction 1 22 - -
Cla06g01596 398 Pfam TCP family transcription factor 77 248 IPR017887 -
Cla06g01596 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 397 IPR005333 GO:0003700
Cla06g01596 398 MobiDBLite consensus disorder prediction 219 255 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01209 Cla06g01596 CCT
Cla04g01209 Cla06g01596 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01434 Cla-Chr5:20201216 Cla06g01596 Cla-Chr6:29505943 3.08E-38 dispersed
Cla06g00015 Cla-Chr6:195568 Cla06g01596 Cla-Chr6:29505943 8.91E-38 dispersed
Cla06g00182 Cla-Chr6:2119670 Cla06g01596 Cla-Chr6:29505943 5.15E-38 dispersed
Cla06g01596 Cla-Chr6:29505943 Cla11g01311 Cla-Chr11:26626250 1.25E-45 dispersed
Cla04g01209 Cla-Chr4:27239889 Cla06g01596 Cla-Chr6:29505943 3.12E-73 wgd
Cla05g02451 Cla-Chr5:35942771 Cla06g01596 Cla-Chr6:29505943 5.53E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61329 PF03634 TCP 1.10E-39 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01596 - - csv:101221049 632.484