Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01605 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACTTGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAACAAGAACACCACTTCTTCTTCCTCACTGACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGAAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCACCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTACCCCCAAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTCATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCCGCCCCCACCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTCGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1611 43.39 MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQITQTNGSTINNIDHEVEEEVDDLVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPSSLPPPPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTATAAANLHGMNMYLSNNTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNSYPQKYPFTSLDFGSSQPNFMSWNNNNNSGHQAYSNISKNNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSFVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29568866 29573652 - ClCG06G016350.2 Cla06g01605 275797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01605 536 Gene3D WRKY domain 202 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01605 536 MobiDBLite consensus disorder prediction 516 536 - -
Cla06g01605 536 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 31 500 - -
Cla06g01605 536 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01605 536 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01605 536 SMART WRKY_cls 217 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g01605 536 Coils Coil 37 85 - -
Cla06g01605 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 31 500 IPR044810 GO:0003700
Cla06g01605 536 MobiDBLite consensus disorder prediction 1 41 - -
Cla06g01605 536 MobiDBLite consensus disorder prediction 492 511 - -
Cla06g01605 536 MobiDBLite consensus disorder prediction 152 204 - -
Cla06g01605 536 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g01605 536 MobiDBLite consensus disorder prediction 356 377 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01429 Cla06g01605 CCT
Cla01g01429 Cla06g01605 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01057 Cla-Chr5:10905271 Cla06g01605 Cla-Chr6:29568866 1.26E-48 dispersed
Cla05g01684 Cla-Chr5:28505201 Cla06g01605 Cla-Chr6:29568866 5.37E-23 dispersed
Cla06g01605 Cla-Chr6:29568866 Cla10g01231 Cla-Chr10:27030352 3.44E-28 dispersed
Cla01g01429 Cla-Chr1:28775137 Cla06g01605 Cla-Chr6:29568866 4.72E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61331 PF03106 WRKY 1.20E-23 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01605 - - csv:101213180 658.677