Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01608 ATGGGTCCTTTCATTTGGGTCTTCTCCTTCATTTTAGCAGCTACCCTTTTGAGCCACTGCTGTTTTTCTCTCACTGAAGATGGTCTAACATTGTTGGAGATCAAAAGTACTTTAAATGACACTAAGGACGTCCTCACTAACTGGAACCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCGAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATTCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACTTGAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATGTTGGAAACCTTTCATATCTTACCATACTTTGTTTTGTACTTCACCTCTGTTACTCAGTTTTCATCACTGGTGTATTTAATTGTAGTGATTTATCAAGCAATTCCCTTAAGGGTAGTATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACTAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGTAACAACTCGTTCTTTGGCAATCAAGGTCTTTGTGGCCGACAAGTGAACAAGCCGTGCCGGACCTCACTGGGGTTTCCTGTCATTTTACCACATGCTGCAAGTGATGAAGCCGCAGGCAATTTATCTTTACACTTCGATGAAATTATTTACCACTTAATCATATTGCAATTAGTTCCTGCCAAACGGTCCTCTCATTACATGAAAGGACTGTTGATTGGTGCAATATCGACAGCAGGGTTTGTATTGGTCATATTTATTGTATTCATGTGGACTCGTTTGGTGTCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGCGAAACAAGTGCGAAGCTTATTACATTTCATGGTGATCTACCGTATCCAACACGTGAGATCATAGAAAAGCTGGAAGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTTTTGGCACTGTGTATCGGATGGTCATGAATGATTCTGGAGCTTTTGCTGTGAAGAAAATTGATAGGACTCAAGGCGGTCCAGACCAAGTTGTTGAAAGAGAATTGGAGATATTGGGTAGCATTAAGCACATAAATTTAGTGAAATTGCGTGGTTATTGCCGGCTTCCTTCTTCAAAGCTTCTCATATATGACTATCTGGCGGCGGGTAGCTTGGATGATTTCTTGCACGAATATGGACCACAAAAGTCTTTGGATTGGAGTGCTCGGTTAAACATAGCACTAGGCTCTGCTCGAGGATTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTTCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGGGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTAATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCGAGTGATCCATTTTTCTCAAAGCGGGGCGTAAATATTGTTGGTTGGTTGAACACACTGCGGGGAGAAGACCAATTGGAGAACATAGTTGATAATAGGTGTCGGAATGCAGATGTTGAAACTGTAGAAGCGATTCTCGAAATAGCGGCGAGGTGCACCGATGGCAACCCGACTATGCGACCTACAATGAACCAAGTACTGCAGCAGCTAGAGCAAGAGTTTGTGCAACATGTTAAGAAACAGCTGCATAATGTGTTCACTAGTGGATTAGTTTTTCAACCCACGTTCTTGTTGGGAGGGCTTGAGTTCCATGAAGAAACTCAACAGCTGAACTTTTGGGAAGACTATGTGGACTGGAGGAAGAGACCTGCTGTAAAAGGACGCCATGGAGGCATGCTGGCTGCCTCCTTTGTATTGGTTGTAGAAGTATTGGAGAATCTAGCATTCCTGGCCAATGCAAGCAATCTTGTTCTGTATCTGTCCAAGTTCATGCATTATTCTCCATCCGAGTCTGCCAACATCGTCACCAATTTTATGGGCACAGCTTTCCTTCTTGCGCTCCTTGGCGGCTTTCTAGCAGATGCTTTCTTCACCACTTACTCTATCTTCTTGATAAGTGCTGCAATAGAATCCTTGGTAAAGAAAACATATTGTGGAGTGCAGGGACTGGTAATTCTGACGCTCCAAGCTGATGTACCATATCTGAAACCTGCAAGATGCGTTTCAAATGCAGTGGGGAATGGAAATTCATGCCATAAAGTTGGAGGTGGGGAAGCAGTGATGCTATTTGCAGGGCTTTACATGGTGGCACTTGGAGTTGGAGGGATAAAAGGGGCACTTCCTCCTCATGGGGCTGAGCAGTTTGATGAGACCAGCTTTGAAGGAAGGAAGAAAAGATCTGCATTCTTCAACTACTTCATCTTCTGTCTTTCATGTGGAGCTTTGATTGCTGTAACTCTGGTGGTGTGGATGGAAGATAACAAAGGATGGCAATGGGGTTTTGGAATCTCCACTCTTACAATACTCATCTCTATTCCTATTTTCCTGCTTGGATCGCCCACTTACAGAATTAAAACGCCAGCCGGAAGCCCAATCACAACCATTTTTAAGGTTTTAGCCTCAGCTGCTTTCAACAGTGGAAAAACAAGAACTTGTAACAACGTAGTGATGAATATATCCACAAGTTCAGTATCTTCAGACCCTACCACCACAGACATTATTCTTGATGAACAAAGACAAAGTGTAGAAAAGGAAAACAACCCAATTCCAATTCCAATTCCAACACAAGCCATGGAGTTTCTGAATAAAGCTACAATCAACAACCCCAACCATCCACAACTAAATTGCACAGTCAAACAAGTAGAAGAAGCCAAAATAGTATTGAAAATCTTCCCAATTTTCACTTCCACCATAATGCTCAACTGTTGCCTTGCACAGCTCTCCACATTCTCAGTCCAACAAGCCGCCACCATGAACACAAAACTCGGTTCTTTCAAAGTCCCCCCTGCTTCTCTCCCTGTCTTCCCTGTCATCTTCATCATGATCCTCGCCCCAACTTACAACCATCTCATACTCCCAATTGCAAGAAAACTCACCAAATCCGAAATGGGAATAACCCATTTACAGAGAATTGGAACAGGGCTCGTTCTGTCCACAGTAGCAATGGCAGTAGCAGCATTAGTTGAAACCAAGAGAAAGACCTTAGCAATGAAAACCCACAAATTGGATTCTTCTGAACCTTTGCCCATCACTTTCCTTTGGGTGGCTATGCAGTATTTGTTTTTAGGGTCGGCGGATTTGTTCTCCTTGGCTGGAATGATGGAGTTTTTCTTCACAGAAGCCCCTTTGAGTATGAGATCTTTAGCCACTGCTTTGTCTTGGGCTTCTTTAGCCATGGGCTACTATTTTAGCTCTGTTTTGGTGACTCTTGTTAATGCTGTGACTAAGGCTTGTGGTCTTAGGCCATGGCTGTATGGGAAAAGCTTGAATCATTATCATTTGGAGAGATTTTATTGGGTGATGTGTGTCTTGAGTGGGCTTAATTTCTTGCAGTATCTGTTTTGGGCTAATCGCTATACTTATAGGTCCATTAATGGAGGAGAGCAATCTTTGAAGGAACAACCATATAATTCTGATTTAGTTGAGGAAAGAGATGTGTAG 3804 42.85 MGPFIWVFSFILAATLLSHCCFSLTEDGLTLLEIKSTLNDTKDVLTNWNPSDESPCKWTGISCHPEDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNVGNLSYLTILCFVLHLCYSVFITGVFNCSDLSSNSLKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQGLCGRQVNKPCRTSLGFPVILPHAASDEAAGNLSLHFDEIIYHLIILQLVPAKRSSHYMKGLLIGAISTAGFVLVIFIVFMWTRLVSKKERTAKSYMEVKKQKNRETSAKLITFHGDLPYPTREIIEKLEALNETNVVGSGGFGTVYRMVMNDSGAFAVKKIDRTQGGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLAAGSLDDFLHEYGPQKSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVNGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCRNADVETVEAILEIAARCTDGNPTMRPTMNQVLQQLEQEFVQHVKKQLHNVFTSGLVFQPTFLLGGLEFHEETQQLNFWEDYVDWRKRPAVKGRHGGMLAASFVLVVEVLENLAFLANASNLVLYLSKFMHYSPSESANIVTNFMGTAFLLALLGGFLADAFFTTYSIFLISAAIESLVKKTYCGVQGLVILTLQADVPYLKPARCVSNAVGNGNSCHKVGGGEAVMLFAGLYMVALGVGGIKGALPPHGAEQFDETSFEGRKKRSAFFNYFIFCLSCGALIAVTLVVWMEDNKGWQWGFGISTLTILISIPIFLLGSPTYRIKTPAGSPITTIFKVLASAAFNSGKTRTCNNVVMNISTSSVSSDPTTTDIILDEQRQSVEKENNPIPIPIPTQAMEFLNKATINNPNHPQLNCTVKQVEEAKIVLKIFPIFTSTIMLNCCLAQLSTFSVQQAATMNTKLGSFKVPPASLPVFPVIFIMILAPTYNHLILPIARKLTKSEMGITHLQRIGTGLVLSTVAMAVAALVETKRKTLAMKTHKLDSSEPLPITFLWVAMQYLFLGSADLFSLAGMMEFFFTEAPLSMRSLATALSWASLAMGYYFSSVLVTLVNAVTKACGLRPWLYGKSLNHYHLERFYWVMCVLSGLNFLQYLFWANRYTYRSINGGEQSLKEQPYNSDLVEERDV 1267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29597837 29610517 - ClCG06G016390.2 Cla06g01608 275800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01608 1267 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 663 1245 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cla06g01608 1267 SUPERFAMILY MFS general substrate transporter 680 1242 IPR036259 -
Cla06g01608 1267 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Cla06g01608 1267 PANTHER PROTEIN NRT1/ PTR FAMILY 4.7 663 1245 - -
Cla06g01608 1267 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cla06g01608 1267 CDD MFS_NPF4 680 1239 - -
Cla06g01608 1267 Gene3D MFS general substrate transporter like domains 652 1247 IPR036259 -
Cla06g01608 1267 ProSiteProfiles Protein kinase domain profile. 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01608 1267 Pfam POT family 769 1204 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cla06g01608 1267 SUPERFAMILY L domain-like 22 221 - -
Cla06g01608 1267 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01608 1267 Gene3D Transferase(Phosphotransferase) domain 1 425 636 - -
Cla06g01608 1267 Gene3D Ribonuclease Inhibitor 25 230 IPR032675 -
Cla06g01608 1267 SUPERFAMILY Protein kinase-like (PK-like) 328 619 IPR011009 -
Cla06g01608 1267 Gene3D Phosphorylase Kinase; domain 1 308 424 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01420 Cla06g01608 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01608 Cla-Chr6:29597837 Cla08g00904 Cla-Chr8:21533404 0 dispersed
Cla02g00383 Cla-Chr2:3712679 Cla06g01608 Cla-Chr6:29597837 1.47E-11 transposed
Cla06g00159 Cla-Chr6:1797604 Cla06g01608 Cla-Chr6:29597837 4.13E-34 transposed
Cla01g01420 Cla-Chr1:28700111 Cla06g01608 Cla-Chr6:29597837 0 wgd
Cla05g02475 Cla-Chr5:36153691 Cla06g01608 Cla-Chr6:29597837 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80659 PF00854 PTR2 1.00E-95 CL0015 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01608 - - csv:101217728 1071.23