Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01611 ATGGAAGAAAAGGGAGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCAGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAAGTCTTGAAGTTTTTGGGGTTTATGTGGAACCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGTAAGTGCTCAGCTCTTTGGTTTGTCTTGTCATTTATCTCAGTATATGTCATCTTTACCTGACGTCCTTGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCGCTGTTGGTTATCAACTCAACAATTAGTTTTATTGAGGAAAATAATGCCGGTAACGCTGCCGCTGCTCTAATGGCGAGTTTAGCCCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGCGTGCAAGATGCGTCGGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATTATTCCAGCTGATGCGCGTCTTCTAGAGGGGGATCCATTGAAAATCGACCAGTCTGCTCTTACAGGCGAGTCTCTTCCTGTTACGAAAGGTCCAGGCGATGGCATATATTCTGGTTCTACTTGTAAGCAAGGAGAGATTGAAGCGGTGGTCATTGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGGCACTTCCAAAAGGTAAAGAAGGTCTTGACTGCAATCGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTACAGAAATTATTGTCATGTATCCAATTCAAGATCGTGAATATCGTCCTGGAATCGACAATCTTCTCGTGCTTCTAATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAGATGGCAGGTATGGACGTGCTTTGCAGTGACAAAACTGGAACACTGACATTAAACAAGCTAACTGTTGATAAAAATCTTGTCGAGGTCTTTGCTAAAGGAGTGGATGTGGATACTGTGGTTCTAATGGCAGCCCGGGCATCAAGAACAGAGAACCAAGATGCTATTGATACCGCTATTGTTGGGATGCTTGCTGACCCGAAAGAGGCTCGTGCTGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACTGATAAGCGGACTGCATTGACTTACATAGACCACGAGGGTAAAATGCATAGAGTCAGCAAAGGTGCACCAGAGCAGATTCTGAACCTTGCACACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCCGTTATAGACAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTAGGAAGGAGAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTTCTGCCACTGTTTGACCCACCAAGGCATGACAGTGCAGAGACTATTAGGAGGGCCTTAAATCTTGGAGTGAACGTGAAGATGATTACCGGTGACCAGCTGGCCATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTAGGTCAGGACAAGGACGAGTCTATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCAAGGAAACATATCTGTGGAATGACTGGCGATGGAGTAAATGATGCTCCTGCCCTTAAAAAAGCAGACATAGGGATAGCTGTCGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGACATAGTCCTTACAGAGCCCGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTTCAGAGGATGAAAAATTACACTCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCTTTTATGGTGCTTATCATTGCCATTCTCAATGATGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCTGAAATTTTTACAACTGGCATTATTCTTGGTGGCTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCAGCCTATAAGACAAACTTTTTTCCACGAGTCTTTGGGGTGGCAACTCTGGAGAAAACTGCTCATGATGACATCAGGAAACTGGCCTCAGCAGTGTATCTGCAAGTAAGCACTATAAGTCAGGCTCTCATATTCGTTACTCGCTCTCGAAGTTGGTCTTATGTGGAACGTCCCGGGTTATTACTGGTTGCGGCTTTTCTGGTTGCACAGCTGATTGCTACTTTAATTGCTGTTTACGCAAATTGGAGCTTTGCTGCCATCGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATCATCTTTTACATCCCACTTGATCTCATCAAGTTCTTTATACGATATGCTTTAAGTGGGAGGGCTTGGGATCTTGTTATTGAACAGAGGATTGCCTTTACGAGGCAAAAGGATTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCCGACGCCAAAATGTTCCACGACCGAACTCACTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTAAAAGGACTTGACATAGACACAATTCAGCAAGCTTACACAGTATGA 2895 45.28 MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGVSAQLFGLSCHLSQYMSSLPDVLGKPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVKKVLTAIGNFCICSIAVGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTLGFMLLALIWKFDFPPFMVLIIAILNDVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTNFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29630953 29639064 - ClCG06G016430.1 Cla06g01611 275803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01611 964 PANTHER CALCIUM-TRANSPORTING ATPASE 115 944 - -
Cla06g01611 964 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Cla06g01611 964 Gene3D - 372 519 IPR023299 GO:0000166
Cla06g01611 964 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 39 820 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla06g01611 964 Coils Coil 915 935 - -
Cla06g01611 964 PANTHER PLASMA MEMBRANE ATPASE 1 6 95 - -
Cla06g01611 964 PANTHER CALCIUM-TRANSPORTING ATPASE 6 95 - -
Cla06g01611 964 ProSitePatterns E1-E2 ATPases phosphorylation site. 362 368 IPR018303 -
Cla06g01611 964 Gene3D - 913 964 - -
Cla06g01611 964 SFLD Haloacid Dehalogenase 342 670 - -
Cla06g01611 964 SUPERFAMILY Calcium ATPase, transduction domain A 160 257 IPR008250 -
Cla06g01611 964 Gene3D - 357 656 IPR023214 -
Cla06g01611 964 SUPERFAMILY HAD-like 356 666 IPR036412 -
Cla06g01611 964 Gene3D - 160 244 - -
Cla06g01611 964 PRINTS H+-transporting ATPase (proton pump) signature 619 635 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 PRINTS H+-transporting ATPase (proton pump) signature 650 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 PRINTS H+-transporting ATPase (proton pump) signature 774 795 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 PRINTS H+-transporting ATPase (proton pump) signature 476 494 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 129 379 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 594 690 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla06g01611 964 Pfam E1-E2 ATPase 158 339 - -
Cla06g01611 964 PRINTS P-type cation-transporting ATPase superfamily signature 619 638 - -
Cla06g01611 964 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Cla06g01611 964 PRINTS P-type cation-transporting ATPase superfamily signature 514 525 - -
Cla06g01611 964 PRINTS P-type cation-transporting ATPase superfamily signature 207 221 - -
Cla06g01611 964 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Cla06g01611 964 PRINTS P-type cation-transporting ATPase superfamily signature 642 654 - -
Cla06g01611 964 Pfam haloacid dehalogenase-like hydrolase 356 633 - -
Cla06g01611 964 PANTHER PLASMA MEMBRANE ATPASE 1 115 944 - -
Cla06g01611 964 SFLD p-type atpase 342 670 IPR044492 -
Cla06g01611 964 Gene3D - 122 829 - -
Cla06g01611 964 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 861 IPR023298 -
Cla06g01611 964 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Cla06g01611 964 CDD P-type_ATPase_H 39 855 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01418 Cla06g01611 CCT
Cla01g01418 Cla06g01611 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01611 Cla-Chr6:29630953 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla01g01418 Cla-Chr1:28677689 Cla06g01611 Cla-Chr6:29630953 0 wgd
Cla06g01611 Cla-Chr6:29630953 Cla09g01799 Cla-Chr9:35503369 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01611 K01535 - csv:101217264 1734.92