Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01612 ATGATCAAACGCGTACACATCAGGGCTTACCTCACGGGCCTAACGCGCCCCCTATTTTCCGTCCAACTTAGTAGGAAAAGAGCTCGACGCAGGGCAGAGGTGAAAAATGCAGAGATAGATGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCTTCAGCTCTAATCTTCAGCTACCCATTCAACTTCCAGATTATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCAAACAGTGCTAGATCATTTTTTCTTAGTGGATCACGATGTAATGCAGACGGGACTTCATGTACATGCCCTGAAGATGAAACTTGTGTTTCCCAGAGACGGAATGCTAGAAATGAAATCCTGCCCTCACAAAAGCCATCCACCTTGGTAGCCAATAGTTCACCTAGAGTAGGACCTTTAATTGCAGAAGAAGCAGCAAAAGTAATTATATCTCACAAAACTGACAATGTTGATCTCTCAGTTTCCATACAGCAAGTTACGAACACTGGCCCCAATCACCAGAGGGGGGCAGAATGTGTAAGATATGCCAGTGGCCTTAATACTGTTCTGGATGGTGAGTGCACTTCACCAAAGATTGCAGATCAGGTTGTTAAGGCAGGTATTATGGCTGTAAACTTATTCTCTGACTTTGTGCATTTTAAAGTCCCCTTATCTGACTATGGTGGAACATTTAGCTCATCTAAAAATTGCATGGTCGATCCTGCTCGGTCCATTACTTCTGTCAAACCCTCAAAAATCAAACATTTGAGAAGAGAGAACATTTCTAGTGTCCATTCCAGACCATCAGTTGAAATCCCTATGGATTCTAAGCCCCAAAGTAGCAGTAACCATCATGGTTCAAATTGCAAGCCCACGCAATCCAATTATGTCAAAGGCTCAAAGCAAGTTCCCGAGGCTAGAACACAAAAGTCAGTGGTATTTCACAATATCTCCTCAGACAAGTGTGATAAAAGGACTTTACCACAGAGAACAAGGGTTCATTCAAACAGCTTTACTTCACATTTCCATTCCAATGCACAGACCACATTCACAAATTCTTCTAAAAATTTGAAAAAGCTTCCAGATAATTTAAAAAGCTCGACAGGAATGGCACCAATCACTTCACCGATTTTGAATGCCCCACATGTTGTGGAGAGTGTTTCTTGCATATTGCAACAACTTAAATGGGGCCCTACTGCAGAAGAGGCTATTGGGAAATTGAACTGTTCAATAGATGCTTACCAGGCAAACCAAATTCTGAAGCGGGTAGATGACCACTCTGTTGCTCTTGGGTTCTTTTATTGGTTAAAGCGCCTAGCTAGGTTTAGACATGATGGGCACACTTATACTACTATGATTGGCCTCCTTGGTCGTGCCAAACAGTTTGCTGCTATAAATAGATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACGTATAATCGTATAATTCATAGTTATGGTCGTGCAAACTATTTGCAAGAAGCTGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTAAGCCTGATAGAGTCACCTACTGCACACTCATTGACATTCATGCAAAATCTGGCTTTCTTGATGTTGCCATGGGCATGTATGAGAAGATGCAAGACGCTGGCCTCACTCCTGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGTAGGATGGTTGATCAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTATCGTGATATGCAACAATCAGGCTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTAGGTCATTGCGGTTTCCTTGAGGAGGCAGAAGGTATATTTATTGAGATGCAAAACAAGAACTGGGTCCCTGATGAACCTGTTTATGGTCTATTAGTTGACTTGTGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAATGCGGGTTTAAAGCCAAATGTGCCTACTTGCAATTCCTTGCTTAGTGCCTTTCTTAGGGTGCACCAACTAACAGATGCTTATCAGCTGTTACAATCCATGCTGACTTTTGGTTTAAAACCTTCTCTACAAACTTATACCTTGCTTCTCAGTTGTTGCACTGATGCGCAAATGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACCGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCCGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGATAGAGAGAGCAAGAGGGGGCTTGTGGACGCAGTTGTAGATTTTCTTCATAAATCTGGACTCAAGGAGGAGGCAGGTTGTGTCTGGGAGGCTGCTATGCAAAAGAATGTCTATCCAGATGCTGTAAAGGAGAAAAGCTCATGTTATTGGCTCATTAACTTGCACGTCATGTCTGATGGCACCGCGGTTACAGCTTTGTCTAGGACTCTTGCTTGGTTTCGCCAGCAAATGCTTCATTTAGGTGTTGGTCCCAACCGAATTGATATTGTGACTGGATGGGGTCGGCGAAGTAAGGTCACTGGATCGTCTCTAGTGAGGCAGGCAGTTCAGGACCTGTTGAGCATTTTTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTGGGGTGTGGTGAGCCTCTAAGTAGATGGTTGAACCAATCTTATGTGGAGAGGATGCATTTGTTGTAG 2808 43.2 MIKRVHIRAYLTGLTRPLFSVQLSRKRARRRAEVKNAEIDEGSAASLSLRSSALIFSYPFNFQIMLRAKQIGSLSNSARSFFLSGSRCNADGTSCTCPEDETCVSQRRNARNEILPSQKPSTLVANSSPRVGPLIAEEAAKVIISHKTDNVDLSVSIQQVTNTGPNHQRGAECVRYASGLNTVLDGECTSPKIADQVVKAGIMAVNLFSDFVHFKVPLSDYGGTFSSSKNCMVDPARSITSVKPSKIKHLRRENISSVHSRPSVEIPMDSKPQSSSNHHGSNCKPTQSNYVKGSKQVPEARTQKSVVFHNISSDKCDKRTLPQRTRVHSNSFTSHFHSNAQTTFTNSSKNLKKLPDNLKSSTGMAPITSPILNAPHVVESVSCILQQLKWGPTAEEAIGKLNCSIDAYQANQILKRVDDHSVALGFFYWLKRLARFRHDGHTYTTMIGLLGRAKQFAAINRLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCKPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQNKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLNAGLKPNVPTCNSLLSAFLRVHQLTDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQMNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLHLGVGPNRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLNQSYVERMHLL 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29651915 29655579 + ClCG06G016440.2 Cla06g01612 275804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01612 935 SMART SMR_2 832 918 IPR002625 -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Cla06g01612 935 Pfam PPR repeat family 578 624 IPR002885 -
Cla06g01612 935 Pfam PPR repeat family 683 730 IPR002885 -
Cla06g01612 935 Pfam PPR repeat family 473 519 IPR002885 -
Cla06g01612 935 SUPERFAMILY HCP-like 474 682 - -
Cla06g01612 935 Gene3D Tetratricopeptide repeat domain 524 647 IPR011990 GO:0005515
Cla06g01612 935 Gene3D Tetratricopeptide repeat domain 675 746 IPR011990 GO:0005515
Cla06g01612 935 PANTHER BNAA07G31720D PROTEIN 65 935 - -
Cla06g01612 935 Pfam PPR repeat 540 572 IPR002885 -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 652 685 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 616 650 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 581 614 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 511 545 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 687 719 IPR002885 -
Cla06g01612 935 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Cla06g01612 935 Gene3D - 811 914 IPR036063 -
Cla06g01612 935 Pfam PPR repeat 652 680 IPR002885 -
Cla06g01612 935 Pfam PPR repeat 442 471 IPR002885 -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Cla06g01612 935 ProSiteProfiles Smr domain profile. 835 916 IPR002625 -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 684 718 IPR002885 -
Cla06g01612 935 PANTHER OS03G0856100 PROTEIN 65 935 - -
Cla06g01612 935 MobiDBLite consensus disorder prediction 259 304 - -
Cla06g01612 935 Gene3D Tetratricopeptide repeat domain 393 523 IPR011990 GO:0005515
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Cla06g01612 935 SUPERFAMILY SMR domain-like 833 913 IPR036063 -
Cla06g01612 935 MobiDBLite consensus disorder prediction 250 304 - -
Cla06g01612 935 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01612 - - - csv:101217022 1671.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01303 Cla-Chr2:27103861 Cla06g01612 Cla-Chr6:29651915 1.10E-07 dispersed
Cla06g01612 Cla-Chr6:29651915 Cla11g00789 Cla-Chr11:11355736 3.01E-44 dispersed
Cla06g01612 Cla-Chr6:29651915 Cla05g01669 Cla-Chr5:28369815 2.95E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01612 Cla_Chr06 FPKM 22.269333 23.015093 22.610355 23.694752 27.418844 30.051847 31.244167 57.539871 54.617977 53.117687