Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01614 ATGGCGCGCAAGAAGAGAAACACTGATCCGCGTGCTAAACAATCTCCGGCGGGTCCAAGTGTGTCGAACGCGGCGGAAAAGAGTTCAGTATCTGACAGGGCAAGTAATCAGAACCAAAGTAGGATTGAGCCAGTGGTTATCGATGAATCCGATGGCTTGTCTTCTTCTACAATTAAACTCGAATGCGAGAAGGCTCTTACTGCAATTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAGTTGAGTTCGAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTTTGTAAAAGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGACATTTGAAGAATGCGATTGAGTCTGCTCGCAAAGCAGTCCAGCTCTCACCAAACTCGATTGAATTTTCTCATTTCTATGCAAATTTGCTATACGAGGCTGCAAATGATGCCAAGGAGTACGAGGAGGTGGTGCAAGAATGTGACCGGGCCCTTGGAATTGAAAACCCAATTGATCCCGCTAAAGAAAGCTTGCAAGATGAAAAGAGTCAGAAAATACCTACTGCCGAAGCAAGAATTACACATGTTCAGACTGAATTGAGGCAGTTGATTCAAAAATCAAATATATATTCCCTATCATCTTGGATGAAGAACCTGGGTAACGGGGAGGAGAAGTTTAGGTCAATTACGATTAGAAGAGTTGCAGAGGACCCGATGGAGGTGAGGATGGTTCAAGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAGGAGCGAAGGAAGGAGATCGAAGTTCGTGTTGCTGCTGCAAGGCTGGTGCAACAAAAGTCTGAGACGCCTCAAATGCAGAATGAAGGAGGTAAAGCTGATCGAACCCCGGAATCATCTTCAGGGCCTAGTACAAGAGTTGGTGAGCGGCGGAAACATGGCAATGTGCGGAAACTTGGCTCTTCAGCTGAGAGAAAGAATTGGGTCTGTTCTTTTTGGAGTTCCATGAGTACAGAATCAAAGAAAGATTTGCTCAAGATCAAAATTAGTGATCTTGAGACTTATTTTAGTTCCTTAAAGGATGCCTCGGCAAATGAAGTTATTTTAGAAGCTTTGTCCTTTTATGACGCCAATAAAACATGGAAATTCTGGGTTTGCTGCAAATGTGATAGGAAATCTGTGGATTCGGAATCCCATATGCACCACGTGGTTCAGGAACACCTGGGAAACCTTTTGCCGAAAATGCAATCTATCTTGCCACATAATGTTGATAATGATTGGAGTGAAATGCTTCTTAATTGCTCTTGGAAACCATTGGATGTTTCAGCTACAGCTAGAATGCTCACAGATCAAACAAAATGCAAAGATTCTGAGTTGGCTGAAGATATCTGCCCACAACATCATTCAGAATGTGATGAGTGTTTCAAAGATGCATGGGATTCTTCTCCAGAGAAGCATGATTATGGGAATAGTTTAAATGAATTCAATCTTTATGAGAAAATTAGCAACAGCGGATTTCCAGTACTTGATAGTTTTCCAGTATCTGACGACTCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCGGTATTTGAGTTACTTATTAAACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAGTTTACAATGGATGAGTTACAGGGTCTTGTTTCTAGATCTCATCTTCTAAAGCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGCGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCACTCTTGTGGTGTAGGTAGATATTCTGATAGAAGTACTGATCAAATTGAAGATCCAAAGAGTGACAAACAAGTTGCTGATGTAGAAGAGAAAATTGTTCTCAATGGAGATGGGTCACTTCTCCTTCTCAACGAGTGTTTGCTGTCATCTGATATCCCTCATGCCAGTGGTCAGGTTGCAGCCTCAGATCAGATGCCTTCTGCAATTGGCAAGGATGCTGCAAATGAGGTTCTGTCTGATGGTGATCCTTTCCTGTCCTGGGTATATGCAGGTCCCTCTAGTGGGGAACAATTAGCATCATGGGCACAAAGAAAGGAAGAAAAGACACAACGACGAATGGAAATTTTTCAAACGCTTGAGAAAGAATTTTACACTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCATTGCAATCGGTGGAGGATCTCTGCCTTGAAGTGGGCAAGAAGAGGGAAGCTATGACTGAATTTATCCCCAAGAGTTATGAGTCAATCCTGCGGAAACGAAGAGAGGAGCTTATTGAGGCTGAAAATGATGCAATGTATATTGGCAGTAGGTTTGAGTTAGATGCTGTTACTAATATTTTGAAAGAAGCCGAAGCACTGAATGTTAATCAACTTAGATTTGAGGAAACTTCTGGCAGTGTGTCCTCTCAGCTATATGATTTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGATTATTTGCATCAAGTTGATACTTGCATAGAAGTTGCAATAAAGAGACAGAAGGAACAGCTATCTATCGAGATTAGCAAAATTGATGCACGCATCATGCGAATTGTTACTGGAATGCAAGAGTTGGAACTTAAGCTCGAGCCTGTTTCGGCACATGATTACCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGTCACAAAGAAGTCTGATGCTGCCAGAGAAGCATTTTTAGCTGAACTGGCACTTGATTCAAAAAAGGGTATCAAAAGTGGAAGTGATAATTCAAAACATGCACATGAAAAGCCGAAGGAAAAGAAAAAAAGCAAGGAGTTTAGGAAAGCCAAGGACTCTAAGGTGGTCAATGCTCCTGAGCAGGATGTGCTTCATGATGAGGCTGTGGATGGAGATCCCTGTCAAATTCCATCTGATGGTGATGCGGCGGAGGTGGACATTCCTGTTATTGAAAACTCTGACGCTTTAAGACTACAGGAGGAAGAGATAAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAATTACAAAAGAAATCTGCACAGACAAATCTAGAGGATAAAGCTGCTCTGGCAGTACATGATAATCTCATTGGACCTGCCCCCAGTGTTGAGGGTGTTGGTGAGCATTTTAAGCCCTCTGTGATGGATCAATTGGCAGAAAGTGAATTGGTTCCTGACTTGTCACCACCGAAGGCTTCTTCAGGTGCATCCAATGTAGCAATTCTAGAGACTAGTCTACCGTCTTCTGATAGGAGGAGGGGAAGGAAAGGTAGACGGCACAAGGCTTCAATCAAACAAGTAGATGGAAATCAGCCTTCACAATCTGAGAAGGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTTAGACATCATGACAATCTCCTAGTAGATAGTGTTAAACCACTTTCTGAAGATTATAGTACAAAGACTTTGAGACAACAACATGCAGCGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGGCAGAGCCTTGATGCATTTCAAGAAAAGCAGAAATTGCCCTTGGTTACAAGTTCTAGGACACCGTTGATCAGTCGTGGTGAAGTAGATAGTAATGATCCTCCATCAAATGAACTCAATGTGGACAATATCTGTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTGTGGCATTTAAGACGGTTTCGAGAAGAGTTTCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTCACTGCCTTGAGCATGGCTTCTGCAGATGCTAGAAGAGAAGCAGTTGCTCCCACTTCTCTAAGAATAGCTCTGAGCAATCTGTGTCCTGATAGTAATTTTTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCTGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTCGAGCATTTCTGATACAGAATCAGTGGAAAGCAATTGTATGGGGTCGTGGGACTGTGCAAGTGACAGTTGTTTGGTACATTCCATCTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTGGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTCGGTGGTTGTGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAATGCTGATGACATATCCGCGACATTAGCTGCTCTGAATACCGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAATACACATAATTTGGTATCAGTGGTTTGCTATTATGGTCAGCACTATCATTGTTTTGCTTACAGTCACGACAAGAAATGCTGGATAAAGTATGATGATAGAACTGTTAAGGTAATTGGCGATTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4785 41.92 MARKKRNTDPRAKQSPAGPSVSNAAEKSSVSDRASNQNQSRIEPVVIDESDGLSSSTIKLECEKALTAIRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTIFVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEAANDAKEYEEVVQECDRALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSLSSWMKNLGNGEEKFRSITIRRVAEDPMEVRMVQARRANEIKKATKTPEERRKEIEVRVAAARLVQQKSETPQMQNEGGKADRTPESSSGPSTRVGERRKHGNVRKLGSSAERKNWVCSFWSSMSTESKKDLLKIKISDLETYFSSLKDASANEVILEALSFYDANKTWKFWVCCKCDRKSVDSESHMHHVVQEHLGNLLPKMQSILPHNVDNDWSEMLLNCSWKPLDVSATARMLTDQTKCKDSELAEDICPQHHSECDECFKDAWDSSPEKHDYGNSLNEFNLYEKISNSGFPVLDSFPVSDDSERTKLLEKIHAVFELLIKHKYLAASHLNKVIQFTMDELQGLVSRSHLLKQGLDQTPLCICFLGASQLRKILKFLQELSHSCGVGRYSDRSTDQIEDPKSDKQVADVEEKIVLNGDGSLLLLNECLLSSDIPHASGQVAASDQMPSAIGKDAANEVLSDGDPFLSWVYAGPSSGEQLASWAQRKEEKTQRRMEIFQTLEKEFYTLQNLCERKCEHLNYEEALQSVEDLCLEVGKKREAMTEFIPKSYESILRKRREELIEAENDAMYIGSRFELDAVTNILKEAEALNVNQLRFEETSGSVSSQLYDLESGEDEDWRAKDYLHQVDTCIEVAIKRQKEQLSIEISKIDARIMRIVTGMQELELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDVTKKSDAAREAFLAELALDSKKGIKSGSDNSKHAHEKPKEKKKSKEFRKAKDSKVVNAPEQDVLHDEAVDGDPCQIPSDGDAAEVDIPVIENSDALRLQEEEIRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEDKAALAVHDNLIGPAPSVEGVGEHFKPSVMDQLAESELVPDLSPPKASSGASNVAILETSLPSSDRRRGRKGRRHKASIKQVDGNQPSQSEKDNVAFDNQLNEQVRHHDNLLVDSVKPLSEDYSTKTLRQQHAADDEERFQADLKKAVRQSLDAFQEKQKLPLVTSSRTPLISRGEVDSNDPPSNELNVDNICGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFTALSMASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSISDTESVESNCMGSWDCASDSCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCENADDISATLAALNTEIDISVLYRGLDPKNTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGDWPDVLTMCEKGHLQPQVLFFEAVN 1594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29663080 29671829 + ClCG06G016460.1 Cla06g01614 275806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01614 1594 MobiDBLite consensus disorder prediction 281 324 - -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 310 324 - -
Cla06g01614 1594 SUPERFAMILY Cysteine proteinases 1261 1591 IPR038765 -
Cla06g01614 1594 Gene3D Cysteine proteinases 1249 1594 - -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 1 48 - -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 1105 1158 - -
Cla06g01614 1594 Coils Coil 1017 1066 - -
Cla06g01614 1594 PANTHER UBIQUITIN SPECIFIC PROTEINASE 4 1594 - -
Cla06g01614 1594 Pfam Ubiquitin carboxyl-terminal hydrolase 1262 1575 IPR001394 GO:0004843|GO:0016579
Cla06g01614 1594 Gene3D Tetratricopeptide repeat domain 53 197 IPR011990 GO:0005515
Cla06g01614 1594 MobiDBLite consensus disorder prediction 943 974 - -
Cla06g01614 1594 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 4 1594 - -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 13 48 - -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 283 309 - -
Cla06g01614 1594 CDD Peptidase_C19 1353 1591 - -
Cla06g01614 1594 Pfam Protein of unknown function (DUF629) 335 853 IPR006865 -
Cla06g01614 1594 Coils Coil 112 132 - -
Cla06g01614 1594 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1261 1593 IPR028889 -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 942 974 - -
Cla06g01614 1594 MobiDBLite consensus disorder prediction 1112 1126 - -
Cla06g01614 1594 Pfam Protein of unknown function (DUF627) 64 174 IPR006866 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01614 Cla-Chr6:29663080 Cla02g01438 Cla-Chr2:28907190 2.10E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01614 - - mcha:111007268 2599.31