Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01615 ATGTTGGGGTATACCGTTGGTGGGAGAGGGAGAGAGAGGAAGAAGACTTTGAGCAGATTCTTCCTTCATAAACCCTTCCCCCATTCTCCCTTCCTTCCTTCCGGATGCCAAATCTCTCCTCCTCTTCTTTCATGGGCGTCCGATTCGCCTTCTTCCCTACCCCATCTTCTTCTTCCTTGTATGGACGGCGCCGCCGCCCACTCTATTGATCGCTCCTCTCACGCAAAATTACATCATGATTCGCCGTCCACGCCGCCGGAAGCGGCGGAAGACTACTACTTCTACACCGATTCCGGACTCTCTGGTGTTCCGCTGACGGAGGCTCCAATTCTCCTGCTTATTAAATTCCACAGAGCACTGCGATCGGAGCTCGCGGATTTACGGCGCGTGACGTTGGCAGCGGCCGAGAGTGGCTGTTACGGCGGCGAGTTTGTGTCGGGATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCTGCCGAGGATGAGGTTGTATTCCCAGCTCTTGATCTACACACAAAAAATGTCATCTCCACATATTCTTTGGAGCATGAGAGCTTGGATGGCCTCTTCACTTCCATTTCTGAACACTGTGAAGAAATCAATGGAGAAAACAAAGATATCTCCAAGCCATTTCAAGAACTGGTTTTCTGTTTGGGCACCCTTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCGTTGCTGATGAAGGAATTCTCGGCAAGAGAACAGGCGTCGCTTGTGTGGCAATTCATTTGCAGTGTACCAATGGTACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCAGAGCAGCAATCAGAAGTTGTAAACTGCCTAAAAGGTGTAGTGCCAAAAGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAGCACTGAGAAACCTTGGAGAGATGTAGAAGCAGAAGATATAAAGTTGCATTCATCTCAGGACAATGGAGAGAGCCCTGTTGATGGCCTCCATTTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTACTGAAATGCCTATTTCAAGTCAAGAGTTGCACTTCAACAGCTCTTTCTAACCTTGATTCCTTACTTGTCCAAATAAAGTTTCTGGCTGATGTAATTCTTTTTTACAGAAAGGCATCAGAGAAATTCTTTCGTCCCATGTTCAATCGACATTCCGACGTCTGCCCAGTCGCCTCTGACCAACCATTTCTTTGTGATGGTCATATTGAAGGCTTGCAGCAGTTGCTGCAGCATGGTGCTCAAGATACTATGCCCTTGAGCAATTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTACGAGTCAGCAAACAGTTCACTTTTCAAGAAACAAAGGTGCTTCCAGTGATAAGAAAGAGCTGCAGCCATAAAACACAGCAACAACTCCTGTATATGAGCCTCCGTACTTTGCCACTTGGGCTCTTGAAGTGTATTATTACTTGGTTTTCAGCTCACTTATCTGAGGAACAACTGAGATCTGTACTTCACACCAAATCGCAGGGAGAATTTCGGGTTAACAATGCACTCATCGCCCTCTTGCAGAATTGGTTTCGAATTGGCTACTCAGGAAAAACCTCGGTCGAACAATTTGGACAAGATTTGCAGAAAATTTTCAAGACCAGAAGCTATTTTTTGCACAAACAGGTAGAACAAATGAAGGAAGTTGCTGGAACTTCATCCTTGAGCTCAAATTCTCAATCTAATAAGGGGTCAAACTCTGAGGAAATGGGATCACTTTCTACTAACAAGGACAAGAGCTTCATGTCAAATTCTTCATCAAGTGTTTCTTGCACTGCTTCAGTGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAGATACATTTTCCAGGAACAGTGAAGGTACCATGTCCGTATACTAAACATCTTTACGAAGAACGCCCACATTCCACTTTTAATCAGCCAAAACCAATAGATCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTATTTTGTTCTTGGTTCAGCTAAACTGGTTGAACATGTTGGGATCTTGACAGAGTTTCGAAGGCGGTTCCAATTGGTGAAATTTTTATATCAGATCCATACAGATGCTGAGGACCAGATTGCTTTTCCAGCTTTGGAGAAGAAGGGAAAGTTCCAAAACATTAGCTACTCCTACACTATTGACCATAAACTGGAAGTACACCAATTCAGTCAAATTTCCTTCATTCTTAATGAAATGTCTGAATTGCACTCTTCAATTTTTTATGTCAATGCTGATAGGAAAATGTTTAGCCACAGACAGCTCTGTTTGGAACTCCATGATTTGTGCAAATCTTTGCACAAGTCGGTTTCTGACCACGTCGATCGCGAAGAAATTGAACTTTGGCCCTTGTTCAGAGAATTCTTCTCGATCGACGAACAAGAAAGACTTATTGGAGCAATATTTGGTAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGAAATACTATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAAGGTGGCAGCTGAGGTGAAAACTATTACTCCCTCATTGACTTCAGATCCTTTGGAAATCATCTCAAAATATCTATCCAAGGAAGTAACTGATGTATGTGAAGGAAATCTTTTTGGAAAAACCATAAGCTCAACACAGAAGGAACATCAATGTCAGGTTACTGATGATGACAAGACAGAAATGTTCAATTTGAATGACGAGACAAAAGATTTTGATGGCAGCCAACATAACGAAACACTTGAAGAATCCCCAAAACTTGTTTATCATCGGGACGTCGATGGTACCACAGAACATGTGACTGAAACGGAACAACCTGAAAAAGGTAAGAAATCAAGCCAACATGATGACCTTCTTACAATTAGTCAAGAAGATCTGGAGGCTGTAATAAGAAGGGTATCAAGAGACTCATCCTTAGACTCCAAAAGTAAATCCCACTTGATACAGAATTTGTTAATGAGCCGTTGGATTGCAAAGAACCAAGCCCAATTAGAGACAAACATTACAACAGAAAGCCAAGGATTTGCAGGTCAGTATCCATCTTATAGGGATTCCTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTATTTACATGCATACATTGTCACGATGAGGCAACCGATCACCCATTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCAATTAGCAAGACATGTTCAACTCTCTCTTGTGGTAATTTGTCCATGGGAAAATACTTCTGCAAGATCTGCAAACTATTTGACGATTCAAGAGATATCTACCACTGTCCATATTGCAACCTATGCCGAGTTGGGAAGGGATTGGGCATTGATTACTTCCATTGCATGAACTGCAATGCCTGTATGTCTCGTGCACTCTCGGTTCATGTATGCAGAGAGAAATGCCTTGAAGACAACTGCCCTATTTGCCATGAATACATTTTCACTTCCACCCTTCCAGTCAAGTCCCTTCCATGTGGTCATTTGATGCATTCAGCATGCTTTCAGGAATACACCTACACTCATTATACCTGCCCAATCTGTAGCAAGTCGCTCGGAGATATGCAGGTGTACTTTGAGATGTTGGATGCATTATTGGCTGAAGAGAAAATTCCAGAAGAGTATTCTGGAAAAACTCAGGTGATATTGTGTAACGACTGCGAGAAGCGTGGAACGGCACCATTCCACTGGTCGTACCATAAATGTTCATGGTGTGGTTCATATAATACTAGGGTTTTG 3939 42.4 MLGYTVGGRGRERKKTLSRFFLHKPFPHSPFLPSGCQISPPLLSWASDSPSSLPHLLLPCMDGAAAHSIDRSSHAKLHHDSPSTPPEAAEDYYFYTDSGLSGVPLTEAPILLLIKFHRALRSELADLRRVTLAAAESGCYGGEFVSGLIRRVEFLKLAYKYHCAAEDEVVFPALDLHTKNVISTYSLEHESLDGLFTSISEHCEEINGENKDISKPFQELVFCLGTLQTTICQHMIKEEQQVFPLLMKEFSAREQASLVWQFICSVPMVLLEELLPWMMSFLPSEQQSEVVNCLKGVVPKEKLLQEVIMSWLGSTEKPWRDVEAEDIKLHSSQDNGESPVDGLHFWHGAIMKDLKEVLKCLFQVKSCTSTALSNLDSLLVQIKFLADVILFYRKASEKFFRPMFNRHSDVCPVASDQPFLCDGHIEGLQQLLQHGAQDTMPLSNFLEKLCWDMESFVVRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYMSLRTLPLGLLKCIITWFSAHLSEEQLRSVLHTKSQGEFRVNNALIALLQNWFRIGYSGKTSVEQFGQDLQKIFKTRSYFLHKQVEQMKEVAGTSSLSSNSQSNKGSNSEEMGSLSTNKDKSFMSNSSSSVSCTASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSTFNQPKPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILTEFRRRFQLVKFLYQIHTDAEDQIAFPALEKKGKFQNISYSYTIDHKLEVHQFSQISFILNEMSELHSSIFYVNADRKMFSHRQLCLELHDLCKSLHKSVSDHVDREEIELWPLFREFFSIDEQERLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHEKVAAEVKTITPSLTSDPLEIISKYLSKEVTDVCEGNLFGKTISSTQKEHQCQVTDDDKTEMFNLNDETKDFDGSQHNETLEESPKLVYHRDVDGTTEHVTETEQPEKGKKSSQHDDLLTISQEDLEAVIRRVSRDSSLDSKSKSHLIQNLLMSRWIAKNQAQLETNITTESQGFAGQYPSYRDSLKKEFGCKHYKRNCKLLAPCCNQLFTCIHCHDEATDHPLDRKSITKMMCMNCLVVQPISKTCSTLSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPEEYSGKTQVILCNDCEKRGTAPFHWSYHKCSWCGSYNTRVL 1313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29672400 29680146 - ClCG06G016470.1 Cla06g01615 275807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01615 1313 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 100 1313 - -
Cla06g01615 1313 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 100 1313 - -
Cla06g01615 1313 Gene3D nmb1532 protein domain like 112 264 - -
Cla06g01615 1313 Gene3D nmb1532 protein domain like 664 835 - -
Cla06g01615 1313 MobiDBLite consensus disorder prediction 984 1004 - -
Cla06g01615 1313 Pfam Hemerythrin HHE cation binding domain 113 246 IPR012312 -
Cla06g01615 1313 Pfam Ring finger domain 1205 1248 IPR001841 -
Cla06g01615 1313 CDD Hr-like 112 244 - -
Cla06g01615 1313 CDD Hr-like 671 814 - -
Cla06g01615 1313 SMART ring_2 1207 1248 IPR001841 -
Cla06g01615 1313 ProSiteProfiles Zinc finger CTCHY-type profile. 1143 1206 IPR017921 -
Cla06g01615 1313 MobiDBLite consensus disorder prediction 581 617 - -
Cla06g01615 1313 SUPERFAMILY RING/U-box 1194 1253 - -
Cla06g01615 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1200 1251 IPR013083 -
Cla06g01615 1313 Gene3D - 1278 1313 - -
Cla06g01615 1313 Pfam Zinc-ribbon 1254 1311 IPR039512 -
Cla06g01615 1313 Pfam CHY zinc finger 1078 1153 IPR008913 GO:0008270
Cla06g01615 1313 ProSiteProfiles Zinc finger RING-type profile. 1207 1249 IPR001841 -
Cla06g01615 1313 SUPERFAMILY CHY zinc finger-like 1069 1134 IPR037274 GO:0008270
Cla06g01615 1313 SUPERFAMILY Zinc hairpin stack 1144 1198 IPR037275 -
Cla06g01615 1313 ProSiteProfiles Zinc finger CHY-type profile. 1071 1140 IPR008913 GO:0008270
Cla06g01615 1313 CDD RING-H2_Pirh2 1206 1249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01615 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 2274.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01457 Cla-Chr6:28129883 Cla06g01615 Cla-Chr6:29672400 2.70E-12 dispersed
Cla06g01615 Cla-Chr6:29672400 Cla09g00592 Cla-Chr9:5482463 5.08E-51 dispersed
Cla06g01615 Cla-Chr6:29672400 Cla02g02104 Cla-Chr2:36071105 7.46E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01615 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0