Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01617 ATGGAAGCTCCTCCGATTCCGAGCAACAGATGGATGGCTACCGTTGCCAGCATTTGGATCCAGTGCATCTGCGGTCCATCCTACACCTTCAGCATCTACTCCGCCGCCCTCAAATCCACTCAAAACTACGATCAATCCACTCTCGACACTGTTTCCGTCGTCAAAGATATCGGCGCCACCGCCGGGGTTCTCTCCGGCCTCCTCTACTCCGCCGTCGTCTCCACAGACCACCCCCGTCGCCCATGGATCGTCCTCACCGTCGGAGCTATTCAATGTTTCCTTGGATACATTTTCATGTGGGCCGCCGTCTCCGGCTTAATCCCTCGACCGCCGGTGCCGACAATGTGTCTGTTCATGTTCTTAGCCGTCCATGCCCAAGTTTTCTTCAACACGGCTAATGTTGTCACTGGCGTTCATAATTTCCAGCTCTACAGCGGCACCATTGTCGGCATTCTAAAGGGATTTTTGGGTCTTAGTGCAGCAGTACTGATCCAATTCTCCAACGCATTCTTCAACGGAGACCCTGTAAATTATCTTTTGATGCTGGCGATTTTGCCGGCGGTTACGACTCTGTTGCTCATGAGATTCGTCTTAATCGACAATAAAACAGAGACCGGAAATGAATTGACCCATTTGAATTCCCTCTCGACAATTGCTCTAACAATCTGCGGATATCTCATGATTCTAATCATTTTAGACAACGTTCTCAATCTAGCGACATGGGTTCGCATCTTCACCTTCATTCTCCTCCTCGCCTTTCTTGTTTCCCCTGTCGGAATCGCAATCAGAGCAAAAACAGAAGACTCTGTTTTCAAAACGAAGCTTCAAATTACCGAGAATCCCGTTGAATATCATCGCATTCCCAGCGAGGAGAAGATCAATGATGAGCTGGTGATTGTTAAAGACGGAGAAATGAATATAATCGAGGCAATTGGCACAATGAATTTCTGGCTATTGTTTTTCGCGATGATGTGCGGAATGGGTTCTGGGTTAGCCACCATAAACAACATGAACCAACTGTGCCGGTCCTTGGGATACAGAACAGTCGAAATCAATACATTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGGCGTTTGGGATCTGGCTATGCCTCTGATCTTCTCCTCTGGAAATTAGGGTGGGCGAGGCCATTGTTAATGGCCATTGCCTTGCTAACAATGAGCATCGGCCATATCATCGTAGCTTTAGGATTTCGTGGGAATTTGTACTTGGGATCGGTGATTATCGGGAGATGTTACGGGTCTCAATGGTCGTTAATGCCGGCAATTACGTCGGAGATATTTGGAGTAAAGCATATGGGTACGATTTACAATACCATTGCTGTGGCTAGTCCGATTGGATCTTATGTTTTTGTCTGTTAG 1386 47.33 MEAPPIPSNRWMATVASIWIQCICGPSYTFSIYSAALKSTQNYDQSTLDTVSVVKDIGATAGVLSGLLYSAVVSTDHPRRPWIVLTVGAIQCFLGYIFMWAAVSGLIPRPPVPTMCLFMFLAVHAQVFFNTANVVTGVHNFQLYSGTIVGILKGFLGLSAAVLIQFSNAFFNGDPVNYLLMLAILPAVTTLLLMRFVLIDNKTETGNELTHLNSLSTIALTICGYLMILIILDNVLNLATWVRIFTFILLLAFLVSPVGIAIRAKTEDSVFKTKLQITENPVEYHRIPSEEKINDELVIVKDGEMNIIEAIGTMNFWLLFFAMMCGMGSGLATINNMNQLCRSLGYRTVEINTFVSLWSIWNFLGRLGSGYASDLLLWKLGWARPLLMAIALLTMSIGHIIVALGFRGNLYLGSVIIGRCYGSQWSLMPAITSEIFGVKHMGTIYNTIAVASPIGSYVFVC 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29707001 29708469 + ClCG06G016490.1 Cla06g01617 275809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01617 461 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 459 - -
Cla06g01617 461 SUPERFAMILY MFS general substrate transporter 221 458 IPR036259 -
Cla06g01617 461 PANTHER F25A4.25 PROTEIN 8 459 - -
Cla06g01617 461 Pfam Nodulin-like 10 261 IPR010658 -
Cla06g01617 461 Gene3D MFS general substrate transporter like domains 206 460 IPR036259 -
Cla06g01617 461 CDD MFS_Mch1p_like 10 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01617 Cla-Chr6:29707001 Cla04g00930 Cla-Chr4:24266568 1.12E-99 dispersed
Cla06g01616 Cla-Chr6:29700636 Cla06g01617 Cla-Chr6:29707001 0 tandem
Cla06g01617 Cla-Chr6:29707001 Cla06g01618 Cla-Chr6:29708540 1.79E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01617 - - csv:101216789 596.275