Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01618 ATGACGTCTTTTCTGATCATGGCGGCGGTGGCTTTCTTTGGGTTTGTGGTTGGTGTTGCTCTGTTTTTCCGGACCAGAAGATTCTATCAACTTCTTAGACGGGTAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGGCAAAGCAAGTTCAATTCAATGGAATTGAAATCGGAGACTTCCAGTTTTAGCAACAAATGGGTATCAACAGTTGCTAGCGTATGGATTCAATGCACTAGCGGATCTCTTTACACTTTCTCCATATACTCCCAAACCCTCAAATCAACTCAGGGATACGATCAATCCACTTTGGATATTGTTTCTGTTTTCAAAGACATCGGTGTCAATTGTGGCGTCCTTGCGGGCTTTCTCTATTACTATGCCACCGCTGATGGTCGTCGTCCTGGGCCGTGGATTGTTCACTTGGCCGGTGCAATTCAGTGCTTCTTGGGGTATTTCTTTATCTGGGCTGCCGTTTCTGGGGTCTTTCCTCGGCCGGCGGTTCCCGTTATGTGCCTTTTCATGTTGGTGGCTGCTCATGCTCAGAGTTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAATTTCCCCAGTTATAGTGGGACGATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGGGCAACCTACTTCGTTTCTTCTGATGTTGGCGCTGCTTCCAGCCCTTAATTCCTTATTGTGTATGTGGTTCGTGAGAATCCACCATGCAGATAATGGGATTGAAAAAGAGCATCTGAATACCCTATCCATAATTACTCTGCTCGTTGCTACTTACCTTATGATCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCTTTACATGTTGCTACATTTGTTCTACTTTTGATGTTGCTTGCATCTCCTCTATATATTGCAATTAGAGCCCAACAGAGAGAGTCCAGAAGTATTTTGCACCCTTCTTTTACTGAGAGCGACCGGCTGATTGGTCGCTCCAATCAAGAGACTTCGGATTTTGACTATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTCAAGCTTTGTACACAATAGACTTCTGGATATTGTTTTTTGCGACTGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTCGGTTATACAAGCTTGGAGATAAATACTTTGGTTTCGTTGTGGAGTATTTGGAACTTTTTTGGTCGTTTTGGAGCTGGGTATGTGTCAGATTATTTTCTGCATGTCAAAGGATGGGCTAGGCCGTTGTTCATGTTCATCACTCTGACAACCATGGGCATTGGACATGTAGTGATTGCTTCTGGCCTGCCTGGTGCTCTTTTTGCTGGTTCGGTAGTAGTGGGTGTTTGTTATGGGTCTCAGTGGTCACTAATGCCAACAATTGCTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCCGTAACAGTAGCAAGCCCTGTTGGATCTTATTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAGGAAGCATCAGGTGAAGGAGATACTTGTACTGGAACTTACTGCTTCATGTTATCATTTCTGATTATGGCTTTTGCCACTCTCTTGGGCTCTTTAGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTCTACGATCAAGTTGTTATCAGAAGGCTGCAACACTCATGA 1740 43.33 MTSFLIMAAVAFFGFVVGVALFFRTRRFYQLLRRVRGRGRGRGRGQSKFNSMELKSETSSFSNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYATADGRRPGPWIVHLAGAIQCFLGYFFIWAAVSGVFPRPAVPVMCLFMLVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNGQPTSFLLMLALLPALNSLLCMWFVRIHHADNGIEKEHLNTLSIITLLVATYLMIKIVLEHIFTFQFPLHVATFVLLLMLLASPLYIAIRAQQRESRSILHPSFTESDRLIGRSNQETSDFDYERRRESEESLNLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINTLVSLWSIWNFFGRFGAGYVSDYFLHVKGWARPLFMFITLTTMGIGHVVIASGLPGALFAGSVVVGVCYGSQWSLMPTIASEIFGVVHMGTIFNAVTVASPVGSYLFSVRVVGYIYDKEASGEGDTCTGTYCFMLSFLIMAFATLLGSLAALGLFFWRRSFYDQVVIRRLQHS 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29708540 29717457 + ClCG06G016500.1 Cla06g01618 275810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01618 579 Pfam Nodulin-like 64 315 IPR010658 -
Cla06g01618 579 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 60 579 - -
Cla06g01618 579 Gene3D MFS general substrate transporter like domains 265 560 IPR036259 -
Cla06g01618 579 CDD MFS_Mch1p_like 64 549 - -
Cla06g01618 579 SUPERFAMILY MFS general substrate transporter 3 254 IPR036259 -
Cla06g01618 579 Gene3D MFS general substrate transporter like domains 2 252 IPR036259 -
Cla06g01618 579 Pfam Major Facilitator Superfamily 373 565 IPR011701 GO:0022857|GO:0055085
Cla06g01618 579 SUPERFAMILY MFS general substrate transporter 270 565 IPR036259 -
Cla06g01618 579 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 60 579 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01216 Cla06g01618 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01616 Cla-Chr6:29700636 Cla06g01618 Cla-Chr6:29708540 0 dispersed
Cla06g01618 Cla-Chr6:29708540 Cla04g00930 Cla-Chr4:24266568 3.46E-106 dispersed
Cla06g01617 Cla-Chr6:29707001 Cla06g01618 Cla-Chr6:29708540 1.79E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01618 - - csv:101216552 967.992