Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01622 ATGGCTTCTCATAATACAACTTCCTCACCCAAATCCATGGAACTCCACCGTAGAAATCAACCCACCGCCGCCGTCGTCACTCCCGCCGTTGTCTCTTCCCACCCAACATCACCAAAACTAGATCCCACAACCCCTTTGTCCGGCTTAGACAACTTGTCGAAATCACACCCACCTTCACCAAAAGTGGATTCTATTTCTCTTCACCCACACCCCAAAATGGTCGGCCCCAGAACGGGGCAAAAGGTTGCCAAAAAACCCAACGAAGCCCCTCAAGAACACTCCACTACAGAGAAATTCAATGATTCTGAAGAGAGATTCGAACGCATGATCAACTGTATCACCGCCAAAGAAAGGGAAATGAAACAACTCCTAAAAGAACACGAACATCTCACTCGCAGACTCTCTGTTTCTCTTTCTTCATCACGTAGTGGAAGAAGAAGATCAATCTGTGGCTCACAGATTCAATTAGCAGATGTGTTTGCTAACAATGGAGTCAAAGTGGTTTCGGCCGATATGCCGCCGTTTATGCAGATACACGCCGTCGATTGCGCTAGAAAAGCCCATGATAGTATGGAAAAGTTCACTTCCAAATCCCTTGCGCTGACTCTCAAGAAGAACAGAGCTCTCTCTAATCTTCATCTTCTTTTCTTCTGTTTAGTTGTAATTTCGCCGTCGATTCTTCGGCCTCATAAAGCTTCTATCTTTTCACTCTTCCTTTGTAAAATTTACAAGCGAGTGAGAGAGAGAGACAGGAGAGGGAGCACACAGCACACGGATATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAAGGTGGGAGCGCATTGGGGCTTCGTATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCTGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGATTTGGTTCCAGGTTGTAACAAGGTAGTCTTTATTTGTTACTTTGTGTGCACGAAAAAGGCCAATGTTAATGCAAAAGTTGATGGATGTTACAGTTCAGGGGCGGATTTTCCTAAGAGTTGGGGGAATATTAATTTTGAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG 1722 44.19 MASHNTTSSPKSMELHRRNQPTAAVVTPAVVSSHPTSPKLDPTTPLSGLDNLSKSHPPSPKVDSISLHPHPKMVGPRTGQKVAKKPNEAPQEHSTTEKFNDSEERFERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKNRALSNLHLLFFCLVVISPSILRPHKASIFSLFLCKIYKRVRERDRRGSTQHTDMDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEQSGCGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVVFICYFVCTKKANVNAKVDGCYSSGADFPKSWGNINFEVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29735789 29747789 + ClCG06G016540.2 Cla06g01622 275814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01622 573 MobiDBLite consensus disorder prediction 1 16 - -
Cla06g01622 573 MobiDBLite consensus disorder prediction 1 102 - -
Cla06g01622 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 410 520 IPR036638 GO:0046983
Cla06g01622 573 SMART finulus 418 507 IPR011598 GO:0046983
Cla06g01622 573 CDD bHLH_AtBPE_like 402 523 - -
Cla06g01622 573 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 483 572 - -
Cla06g01622 573 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 260 446 - -
Cla06g01622 573 MobiDBLite consensus disorder prediction 328 343 - -
Cla06g01622 573 MobiDBLite consensus disorder prediction 86 102 - -
Cla06g01622 573 Gene3D - 409 522 IPR036638 GO:0046983
Cla06g01622 573 MobiDBLite consensus disorder prediction 308 327 - -
Cla06g01622 573 MobiDBLite consensus disorder prediction 344 363 - -
Cla06g01622 573 MobiDBLite consensus disorder prediction 25 60 - -
Cla06g01622 573 Coils Coil 498 518 - -
Cla06g01622 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 412 501 IPR011598 GO:0046983
Cla06g01622 573 MobiDBLite consensus disorder prediction 364 403 - -
Cla06g01622 573 Pfam Helix-loop-helix DNA-binding domain 416 502 IPR011598 GO:0046983
Cla06g01622 573 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 483 572 IPR024097 GO:0006355
Cla06g01622 573 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 260 446 IPR024097 GO:0006355
Cla06g01622 573 MobiDBLite consensus disorder prediction 308 403 - -
Cla06g01622 573 Coils Coil 113 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01622 - - - csv:101215588 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01622 Cla-Chr6:29735789 Cla05g00770 Cla-Chr5:7352450 3.34E-40 dispersed
Cla08g00911 Cla-Chr8:21618561 Cla06g01622 Cla-Chr6:29735789 3.98E-85 transposed
Cla01g01408 Cla-Chr1:28528534 Cla06g01622 Cla-Chr6:29735789 2.78E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g472 . . Bda06g00566 Bda15g00591 Bpe12g00567 . . Bma12g01018 . . Cma10g00164 Cma11g00175 Car10g00154 Car11g00126 Sed08g0185 . Cpe04g01526 Bhi02g00374 Tan09g2179 Cmetu02g1551 . Hepe09g0154 . . Cla06g01622 Cam06g1802 Cec06g1853 Cco06g1859 Clacu06g1762 Cmu06g1706 Cre06g2524 . . Cone13ag0099 Cone19ag0102 . . . . Blo13g00032 Blo15g00288 . . Bpe07g00808 . . Bma08g00196 . Cmo10g00176 Cmo11g00134 . . . . . Cpe18g00815 . . . . . . . . . . . . . . Lsi06g01503 Csa01g00196 Chy02g02535 Cme02g01919
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004894 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61334 PF00010 HLH 3.20E-05 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01622 Cla_Chr06 FPKM 30.677456 31.245203 31.968332 32.706791 29.027781 28.687405 28.654879 15.503661 16.516748 13.991444