Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01623 ATGCTTGCGTTGAGAAGCTCACCTTTAAACATGCTTGGTTGCTTCATTATATTGTTCCTTCTTCCTTATCCTTCTTTGTCAGCCGACCCCGATCCGCTGCAGGACTTTTGTGTTGCAGATTTAAATGCTACTGTTTCCCTTAATGGCTTCCCTTGCAAGCCAGTTTCAAAAGTTACTGCAGATGATTTCTTCTTTGATGGATTAAGCAAAGAAGGCAACACAGATAATCCTTTTGGTTTTGGGGTCACACAAGGAAATGTTCTTGCATTTCCAGGACTTAATACACTTGGGCTATCCATGAACCGTGTCGACCTTGCTCGGGGAGGAATAAACGCACCTCACTCGCATCCTCGTGCCTCCGAAAGCATCGTTGTTATTAAAGGGAAGGTTCTTGTTGGTTTTGTGTCAACAAGCAATGTGTACTATACTAAGGTTTTGACTGTAGGGCAGATGTTCATAGTTCCCAGAGGACTTGTTCATTTCCAGTATAATGTTGGACATGGCAAAGCAATTCTACTCACAGCTTTCAACAGTCAGTTGCCAGGGGCCGTGATTGTCTCCAGAACTTTGTTCGCTTCAAATCCTCCGATCCCTGTCGAAATTTTGACCAAGACCTTCCAAGTTGATGCTGGTGTTATCAACAGCATAAAGTCCAACTCACCTCTAAAAATGCTTGCTTCCTTCATAATTATTATACTCTTGCTTCTTCCTTATCCTTCTTCGTCCACCGACCCCGATCCGTTACAGGACTTCTGTGTAGCTGATTTAAATGCAACTGTTTCTCTTAGTGGTTTTCCTTGCAAGCCAGCTTCAGAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGTAAAGAAGGCAACACAGACAATCCTTTTGGTTTTGGCCTCACACCAGGAAATGTTTTTGCATTGCCAGGACTCAATACACTTGGCCTATCCACGAACCGTATCGACCTTGCTCCGGGAGGAATGAATCCACCTCACTTGCATCCTCGTGCCTCTGAAATCGTTATCGTCATTAAAGGGAAGGTTCTTGTTGGGTTTATGACAGTAGATAATAAGTATTATCATAAGATTTTGACTGTGGGGCAGGTGTTCATTGTTCCTAGAGCGCTTGTTCATTTCCAGTATAATGTTGGACATAGGAAAGCTATTGTGCTTGCAGGTTTCAACAGTCAGTTGCCAGGAGGCGTGCTTGTCGCCGGAAATTTGTTTGCTTCAAATCCTCCGATCCCTGTTAAAATTCTGTCTAAAGCCTTACTAGTTGATGATGGTATTATCAACACCATAAACTCACCTCTAAAAATGCTTGCTTCCTTCATAATTATTATACTCTTGCTTCTTCCTTATCCTTCTTCGTCCACCGACCCCGATCCGTTACAGGACTTCTGTGTAGCTGATTTAAATGCAACTGTTTCTCTTAGTGGTTTTCCTTGCAAGCCAGCTTCAGAAGTTACTGCAGATGATTTCTTCTTTGATGGATTGAGTAAAGAAGGCAACACAGACAATCCTTTTGGTTTTGGCCTCACACCAGGAAATGTTTTTGCATTGCCAGGACTCAATACACTTGGCCTATCCACGAACCGTATCGACCTTGCTCCGGGAGGAATGAATCCACCTCACTTGCATCCTCGTGCCTCTGAAATCGTTATCGTCATTAAAGGGAAGGTTCTTGTTGGGTTTATGACAGTAGATAATAAGTATTATCATAAGATTTTGACTGTGGGGCAGGTGTTCATTGTTCCTAGAGCGCTTGTTCATTTCCAGTATAATGTTGGACATAGGAAAGCTATTGTGCTTGCAGGTTTCAACAGTCAGTTGCCAGGAGGCGTGCTTGTCGCCGGAAATTTGTTTGCTTCAAATCCTCCGATCCCTGTTAAAATTCTGTCTAAAGCCTTACTAGTTGATGATGAAGGATTCGCAGCGGAGAAGGAGGATTCATTAACAAGGGGAGGATCCATATCCGCTGATCCAAATGACCCAGAAGCAGTAATTCGCAAGGGATCAAAATCAGATGTCAATGTCGGAGTACCAGAGAGAAATGGAAGAGATTTGGTGTAT 2064 43.02 MLALRSSPLNMLGCFIILFLLPYPSLSADPDPLQDFCVADLNATVSLNGFPCKPVSKVTADDFFFDGLSKEGNTDNPFGFGVTQGNVLAFPGLNTLGLSMNRVDLARGGINAPHSHPRASESIVVIKGKVLVGFVSTSNVYYTKVLTVGQMFIVPRGLVHFQYNVGHGKAILLTAFNSQLPGAVIVSRTLFASNPPIPVEILTKTFQVDAGVINSIKSNSPLKMLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASNPPIPVKILSKALLVDDGIINTINSPLKMLASFIIIILLLLPYPSSSTDPDPLQDFCVADLNATVSLSGFPCKPASEVTADDFFFDGLSKEGNTDNPFGFGLTPGNVFALPGLNTLGLSTNRIDLAPGGMNPPHLHPRASEIVIVIKGKVLVGFMTVDNKYYHKILTVGQVFIVPRALVHFQYNVGHRKAIVLAGFNSQLPGGVLVAGNLFASNPPIPVKILSKALLVDDEGFAAEKEDSLTRGGSISADPNDPEAVIRKGSKSDVNVGVPERNGRDLVY 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29744293 29754724 - ClCG06G016560.1 Cla06g01623 275815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01623 688 SUPERFAMILY RmlC-like cupins 29 221 IPR011051 -
Cla06g01623 688 CDD cupin_OxOx 457 639 - -
Cla06g01623 688 SUPERFAMILY RmlC-like cupins 457 639 IPR011051 -
Cla06g01623 688 CDD cupin_OxOx 244 435 - -
Cla06g01623 688 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED 441 639 - -
Cla06g01623 688 SUPERFAMILY RmlC-like cupins 244 429 IPR011051 -
Cla06g01623 688 Pfam Cupin 283 424 IPR006045 -
Cla06g01623 688 Pfam Cupin 68 210 IPR006045 -
Cla06g01623 688 Pfam Cupin 496 639 IPR006045 -
Cla06g01623 688 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Cla06g01623 688 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Cla06g01623 688 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Cla06g01623 688 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 219 - -
Cla06g01623 688 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 229 434 - -
Cla06g01623 688 SMART Cupin_1_3 494 642 IPR006045 -
Cla06g01623 688 SMART Cupin_1_3 66 214 IPR006045 -
Cla06g01623 688 SMART Cupin_1_3 281 429 IPR006045 -
Cla06g01623 688 ProSitePatterns Germin family signature. 324 337 IPR019780 GO:0030145
Cla06g01623 688 MobiDBLite consensus disorder prediction 647 688 - -
Cla06g01623 688 CDD cupin_OxOx 29 219 - -
Cla06g01623 688 ProSitePatterns Germin family signature. 537 550 IPR019780 GO:0030145
Cla06g01623 688 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 441 639 - -
Cla06g01623 688 Gene3D Jelly Rolls 243 437 IPR014710 -
Cla06g01623 688 Gene3D Jelly Rolls 456 646 IPR014710 -
Cla06g01623 688 Gene3D Jelly Rolls 28 220 IPR014710 -
Cla06g01623 688 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED 13 219 - -
Cla06g01623 688 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED 229 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01623 - - - csv:101215347 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02464 Cla-Chr1:38316850 Cla06g01623 Cla-Chr6:29744293 2.17E-26 dispersed
Cla01g02465 Cla-Chr1:38320983 Cla06g01623 Cla-Chr6:29744293 3.08E-144 dispersed
Cla03g01085 Cla-Chr3:21600324 Cla06g01623 Cla-Chr6:29744293 5.70E-52 dispersed
Cla03g01717 Cla-Chr3:33129953 Cla06g01623 Cla-Chr6:29744293 1.25E-54 dispersed
Cla06g01623 Cla-Chr6:29744293 Cla01g00709 Cla-Chr1:8299181 2.03E-53 dispersed
Cla06g01623 Cla-Chr6:29744293 Cla02g01443 Cla-Chr2:28963597 7.98E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004893 1 2 1 1 1 2 0 2 2 2 1 2 1 2 2 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01623 Cla_Chr06 FPKM 20.391232 23.774033 15.517767 13.409435 8.533826 8.81204 8.928877 0.722512 0.560689 0.233167