Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01625 ATGCCACGTGGCAGAGATCCTCTAGGGAATTCGTTGTATCACCTAATGGTGGAGGCGTTGACCAAAGGTCAAATGAAAGATCAGACGGCTGAGATTCTGCCTTCTACCCCGAGACTGATCGAAACCGAAGGGGCCCTTCCCAGCATGGAGCTTCAGAATACAGTGAAAGAAGCCCTAAACGCACTGTACCATCACCCTGACGATGCCTTCCGTATGCAAGCCGATCGATGGCTTCAAGACTTCCAGCGCACTCTCGATGCCTGGCAGGTTGCCGATAATTTGCTTCACGAACCCACCAGCAATTTGGAAACTTTGATCTTTTGCTCTCAAACACTTAGAAGCAAGGTACAAAGAGATTTTGAAGAACTGCCTTCGGAAGCATTTAGACCCTTGCGCGACTCATTAAATAATTTATTAAGAAAATTTCACAAGGGCCCACCTAAAGTTCGAACTCAGATTAGCATAGCAGTGGCTGCATTAGCAGTACATGTTCCTGCTGATGATTGGGGAGAAGGCGGTATCGTAAATTGGCTCAGGAATGAGATGAACTCACATCCGGAGTATGTACCCGGATTTTTGGAGCTACTGACAGTTTTGCCTGAGGAAGTATACAATTACAAGATCGCAGCTCGGCCGGATAGACGCCGTCAATTTGAAAAGGAACTCACATCCCAAATGGAAGTTACCCTTAATATCTTGACAGCTTGTTTGAATATTAATGAGCTGAAGGAGCAGGTGCTCGAGGCATTTGCTTCTTGGCTTCGATTAAAGCATGGGATCCCAGGATCTGTGCTTGCATCACATCCTTTAGTACTCACAGCTCTAGCAAGTTTGAATTCCGAGCTTCTCTCAGAGGCATCAGTAAACGTTATTTCTGAATTGATACACTATTCAGCAGCTGGAAACTCAAGTGGTCTCCCAGTGCACATGCCTTTAATTCAAGTAATTGTCCCTCAAGTTATGAATTTGAAGGCACAACTTAGAGATTCTTCAAAGGATGAGGAAGATGTGAAGGCCATTGCTCGGTTATTTGCTGACATGGGTGATTCATATGTTGAATTGATTGCTACTGGTTCTGATGAATCGATGTTAATAGTCCATGCCCTACTAGAAGTTACTTCACACCCAGAATATGATATTGCCTCCATGACATTTAATTTTTGGCATAGTCTTCAGTTGAACTTGACAAAAAGGGATGCATATGTTTCTTTTGGCAATGATGCTTCCATTGAAGCTGAAAGGAAAAGGAGGTTACAAATATTTCGTCCAGTTTACGAGTCCCTTGTATCCTTGGTTAGTTTCAGAGTTCAATATCCTAATGACTATCAAGACCTTTCTTATGAGGACCTCAAGGAATTCAAGCAGACTAGATATGCTGTTGCAGATGTCTTAATTGATGCAGCATTGGTTTTAGGAGGTGATATGACTCTGAAAATTCTTTACGTGAGGCTCGTGGAGGCTGTTACAAGCTGTGGAAATAGTGAACAGAGTGAATGGCGTCCAGCAGAGGCTGCTTTGTTTTGCATCCGAGCTATATCAGATTATGTCTCAGTCGGTGAGGCCGAAATAATGCCGCAGGTCATGGGTTTACTTCCAAAACTTCCTCAGCAAGCCCAATTACTTCAGACAGTGTGCTACACTGTTGGAGCATACTCGAAGTGGCTTGATGCATCATCAAGTGGGCAATCAATACTACCCTCAGTAATTGATATCCTCATGAGTGGAATGGGCACATCCGAGGATTCTGCAGCTGCTGCAGCTCTGGCATTTAGAGATATTTGCGCTGATTGCCGGAGAAAGCTTTGTGGATTTTTGGATGGTCTCTTCCATATATATAATGTGACGGTCAATGGAGAAAGTAGTTTGAAGGTGACTGCTGAGGACTCGCTGCACCTAGTGGAAGCATTAAGCATGGTTATCACTGAACTTGTGCCCGATCAAGCTAAAAGAGCACTGGAGGCATTGTGCTTACCTGTTGTTGCTCCTCTGCAGGAAATTGTCAATCAAGGCCCAGAAGTATTGAATAAGAAGCCTTCTAATGAGTTGACAGTCCATATTGATCGGTTTGCTTATATATTCAGATATGTAAATCACCCTGAAGCTGTTGCAGATGCTATACAGAGGCTTTGGCCAATTTTCAAAGCCATCTTCGATATCCGTGCTTGGGACATGCGGACTATGGAATCTCTTTGCCGAGCATGCAAATATGCTGTGAGAACTTCCGGTAGATTTATGGGAATCACAATTGGAGCGATGTTGGAAGAAATTCAAGGTCTATATAACCAGCACCACCAGCCTTGCTTTCTTTATCTGTCTAGTGAAGTCATAAAGATTTTTGGTTCTGATCCATCTTGCGCAAGTTATCTCCAAAGTTTGATTGAAGCATTATTCATGCACACAACACGTCTTCTCACAAGTATTCAGGAATTTACTGCTAGGCCGGATATTGCTGATGACTGCTTTCTTTTGGCCTCGAGATGTATACGATATTGCCCTCAATTATTTATTCCATCTTCGGTATTTCCAGCACTAATAGATTGTTCAATGGTCGGAATCACAGTACAGCACAGGGAAGCCTCAAATTCAATATTGACTTTCTTGGCTGATGTTTTTGATCTTGCAAATTCAAGCAAAAGTGAACAGTATATATCTAGAAGGGATGCAATAGTTATACCTCGAGGTCACGTTATCCTTCGAATTTTGGTTGCAGCCTTGACGGGGGCACTGCCAAGTTCTCGATTAGAACCGGTGACGTACACACTATTAGCGTTAACTCGAGCTTATAGAGTACAAGCGTTAGAGTGGGCCAAGGAAAGTGTTTCATTGATTCCATCGACGGCTGTTACTGAAAAAGAGCGGTCAAGATTTCTAAAAGCGTTATCAGATGCAGCCTCAGGATGCGATATAAATACGCTTGCTGTACCAATAGAAGAGCTCTCAGACGTATGTCGACGAAATAGAAACGTTCAGGAGATAGTTCAAGGAGCTTTGAGGCCTCTTGAACTGAATCTATTGCCTGTATCATAG 3027 43.24 MPRGRDPLGNSLYHLMVEALTKGQMKDQTAEILPSTPRLIETEGALPSMELQNTVKEALNALYHHPDDAFRMQADRWLQDFQRTLDAWQVADNLLHEPTSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRDSLNNLLRKFHKGPPKVRTQISIAVAALAVHVPADDWGEGGIVNWLRNEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTSQMEVTLNILTACLNINELKEQVLEAFASWLRLKHGIPGSVLASHPLVLTALASLNSELLSEASVNVISELIHYSAAGNSSGLPVHMPLIQVIVPQVMNLKAQLRDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVTSHPEYDIASMTFNFWHSLQLNLTKRDAYVSFGNDASIEAERKRRLQIFRPVYESLVSLVSFRVQYPNDYQDLSYEDLKEFKQTRYAVADVLIDAALVLGGDMTLKILYVRLVEAVTSCGNSEQSEWRPAEAALFCIRAISDYVSVGEAEIMPQVMGLLPKLPQQAQLLQTVCYTVGAYSKWLDASSSGQSILPSVIDILMSGMGTSEDSAAAAALAFRDICADCRRKLCGFLDGLFHIYNVTVNGESSLKVTAEDSLHLVEALSMVITELVPDQAKRALEALCLPVVAPLQEIVNQGPEVLNKKPSNELTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYNQHHQPCFLYLSSEVIKIFGSDPSCASYLQSLIEALFMHTTRLLTSIQEFTARPDIADDCFLLASRCIRYCPQLFIPSSVFPALIDCSMVGITVQHREASNSILTFLADVFDLANSSKSEQYISRRDAIVIPRGHVILRILVAALTGALPSSRLEPVTYTLLALTRAYRVQALEWAKESVSLIPSTAVTEKERSRFLKALSDAASGCDINTLAVPIEELSDVCRRNRNVQEIVQGALRPLELNLLPVS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29766306 29781200 + ClCG06G016580.2 Cla06g01625 275817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01625 1008 Pfam Exportin 1-like protein 146 291 IPR013598 -
Cla06g01625 1008 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 51 1004 - -
Cla06g01625 1008 SUPERFAMILY ARM repeat 49 883 IPR016024 -
Cla06g01625 1008 Gene3D - 47 979 IPR011989 -
Cla06g01625 1008 PANTHER TRANSPORTIN MOS14 51 1004 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01625 K15436 TRPO3, MTR10; transportin-3 - csv:101215103 1822.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01300 Cla-Chr5:15753133 Cla06g01625 Cla-Chr6:29766306 2.37E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g420 . . . Bda15g00635 Bpe12g00513 . . . . . Cma10g00279 Cma11g00230 Car10g00262 Car11g00207 Sed08g0303 . Cpe04g01528 Bhi02g00053 Tan09g2002 Cmetu02g1950 . . . . Cla06g01625 Cam06g1806 Cec06g1857 Cco06g1863 Clacu06g1766 . Cre06g2528 . Cone16ag0242 . . . . . . . . . . . . . . . Cmo10g00296 Cmo11g00233 . . . . . Cpe18g00817 . . . . . . . . . . . . . . Lsi06g01506 Csa01g00330 Chy02g02413 Cme02g01923
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008466 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01625 Cla_Chr06 FPKM 5.599825 5.008141 9.478634 8.300578 6.551459 5.588268 6.636825 8.071342 8.664752 10.735559