Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01626 ATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCTTCTTCTTCTTCTTCTCCTCCTCCTTCATCCGCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAGAGGGTGAGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGGTACAACCTTCAACCTCAGTTAAAAAGTTTGTATTCTCTTACTAATCATGATACTATTAGAATTCCATTTGATCTGGATCATGGGTCGCTTTTAATTAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTTCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGTGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACAGCAAATTTCGATCATTGTTGGACAGCGATGCCCCCAGATGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1554 44.59 MVSASTRQKNMHSLLVANLTKLTIPSSSSSSSPPPSSAAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVSETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFRYNLQPQLKSLYSLTNHDTIRIPFDLDHGSLLISEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29787123 29789530 + ClCG06G016590.1 Cla06g01626 275818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01626 517 SUPERFAMILY Protein kinase-like (PK-like) 148 511 IPR011009 -
Cla06g01626 517 ProSitePatterns Protein kinases ATP-binding region signature. 157 188 IPR017441 GO:0005524
Cla06g01626 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Cla06g01626 517 ProSiteProfiles Protein kinase domain profile. 151 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01626 517 Pfam Protein kinase domain 152 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01626 517 Gene3D Phosphorylase Kinase; domain 1 110 273 - -
Cla06g01626 517 MobiDBLite consensus disorder prediction 117 133 - -
Cla06g01626 517 Gene3D Transferase(Phosphotransferase) domain 1 284 480 - -
Cla06g01626 517 Pfam Protein kinase C terminal domain 469 506 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cla06g01626 517 SMART pkinase_C_6 449 508 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla06g01626 517 MobiDBLite consensus disorder prediction 53 67 - -
Cla06g01626 517 SMART serkin_6 151 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g01626 517 MobiDBLite consensus disorder prediction 102 133 - -
Cla06g01626 517 ProSiteProfiles AGC-kinase C-terminal domain profile. 449 516 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla06g01626 517 MobiDBLite consensus disorder prediction 48 71 - -
Cla06g01626 517 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 256 - -
Cla06g01626 517 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 287 515 - -
Cla06g01626 517 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 256 - -
Cla06g01626 517 PANTHER RIBOSOMAL PROTEIN S6 KINASE 287 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01479 Cla-Chr3:30288766 Cla06g01626 Cla-Chr6:29787123 1.41E-58 dispersed
Cla06g01626 Cla-Chr6:29787123 Cla08g01572 Cla-Chr8:28373553 1.06E-60 dispersed
Cla06g01626 Cla-Chr6:29787123 Cla02g00317 Cla-Chr2:3073844 2.63E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80660 PF00069 Pkinase 1.80E-65 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01626 K04688 - csv:101214867 854.744