Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01631 ATGGCGACGGTTCCTGACCGCTTCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGACGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGGTTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACTGGATATGAATTGCTCAAGAAGATCAAGCTTCTTATTACACATAATCAATGGCTGAAAGAGGATTGTTATGAACAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTCAAAGAGGAAGCTACATTTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCATGGATTTCTGCAACGATCAGCACCGTCATTTCGACACGAAGACGAAGACAAAGGCGAAGACGAAGAGCCAAAGCAGAGAGCTTCATCGGAGCTAAGGAAAATGACTCACTCGAAGCTTGAAGACGCCACTGGTTTGAAGGAAGACCTCATCGCAGACGCCTGGGCCGCCGCCATTAAAGCTCACAAACATTCGAAGCCATTTCTCGTTGATAAAACCCGAGATTTCTCCATCATCAGCTTCGCCGGATCTTGGTCGTCCGAAGCCTGGTTCTCTGCTTCTGATTCATCTTTCGGAGAAACAAAGATCGACACTCGGCTGTTTCCATCCGTCAGGAGCATCGGCGTCGACGATTATGCAGTCGTCAACTCTGCATTTTTCCAGAAATTTGAGGGAATTTTGGGGAAGCTTAAGGAGGTTCTGAGAGTGAATAAGCCTGTGGTGTTTACTGGCCACTCAGCCGGAGGTCCGATAGCCATTCTCGCAACCATCTGGCTGTTGGAACAGCAAAGAAACTCAGACTCAAACACCAACTCCACTCCTCCAAGATGCATCACATTTGGATCTCCCCTTGTTGGCAACTTCATTTTCTCCCATGCCCTCAAAAGGGAGAAATGGTCCACCCATTTCGTGCACTTCGTCATGAGATACGACATTGTTCCACGAATCCATGTTGCTCCTCTACCTTCTTTGCAACCACAATTGCAAACCATCCTCAACTCCCTGAACTCGAGATCACCAGGGTCATCATCAAATGGAAATATAGCTACTGAATTCTTCATGACGGTGATGAGGAATGCATCGGCTGTGGTAAGCAACGCCGCCTGCCATCTTATGGGAAATACTAACCTTTTGCTAGACACTTTGAAAAGCTTTGTGAAATTGAGTCCTTACAGCCCTTTTGGCACTTACATTTTCTTTACTGAGAGCGAGAAAGTGGTGGTGGTGAGCAACCCGGATGCTATTTTACAAATACTATTCTACGCTTGTCAGTTGAGCTCTGAGAGCGAATCTGATCACATTGCTCAACAGAGTTTAAATGCCCATTGGGGTTATGAATCTAAAATGCAGAAATTGGAGCTCCTACATGCCATTCGTCTGGATGAATTGGATAAGCTTCCATTGTCCTTAACGAGCAGGAATACACCATTAACTGAAGCGTTGAATGAACTTGGCCTAAGTTCGAGAGCTTTATTGAATCTTCGGGCAGCGGGCACATTTGAAGAGCAGAAATTGAAAAATCAACAAAGGATGGAAGCAAAGAAACAATATATCAAGGAACGATTGGATTGGCTAGAAGAAAATTATAGAGCTGTATGTAAGGTTGATGGTTTGGGATACTATGATGCATTTAAACTCCAGAAGGATCCGAAAGACTTCCAAGCTAATATCAAGAGGCTTGAGCAAGCAGGCATATGGGATGAGATCGTAGAGATGCTCAAAAGATACGAGCTCCCAGAGGAATTCGAGGGCGATGACGAATGGATAAAACTTGGAACCAGGTTTCGCCGTCTCATTGAGCCTCTAGATATTGCTAACTACTATAGACACTCGAAGAATGATGATACTGGTCCTTATCTTGTAAAAGGAAGGCCAAAACGTTACAGATTTACACAAAGATGGCTCGAACATAATCAAAAGATGACAGAACCCAGTGAAGAATCAACTCTTTGGGCAAGGGTTGAGGAGCTTCGTATCCAAACCAAAACCAAAATGTACGCTGAATATTCAAGAGAAATTATAGAGCTGGAGAAGAAGATGAAGCGATGGGTCACTGAGATTGAAGATGACATGTTGTTAAAGAAATCTACCTTCATGGAGTGGTGGAAGACACTACCGGAACATCATAGATCACAGTCTTGTATTAGGGATGATATCGAGAGGATGGCAACTGACGACGATGCTATTAACACGATGTAG 2577 44.39 MATVPDRFRRNPIDRLVGISDDSKQSCSSTTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKLLITHNQWLKEDCYEQESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGSKRKLHFDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRHEDEDKGEDEEPKQRASSELRKMTHSKLEDATGLKEDLIADAWAAAIKAHKHSKPFLVDKTRDFSIISFAGSWSSEAWFSASDSSFGETKIDTRLFPSVRSIGVDDYAVVNSAFFQKFEGILGKLKEVLRVNKPVVFTGHSAGGPIAILATIWLLEQQRNSDSNTNSTPPRCITFGSPLVGNFIFSHALKREKWSTHFVHFVMRYDIVPRIHVAPLPSLQPQLQTILNSLNSRSPGSSSNGNIATEFFMTVMRNASAVVSNAACHLMGNTNLLLDTLKSFVKLSPYSPFGTYIFFTESEKVVVVSNPDAILQILFYACQLSSESESDHIAQQSLNAHWGYESKMQKLELLHAIRLDELDKLPLSLTSRNTPLTEALNELGLSSRALLNLRAAGTFEEQKLKNQQRMEAKKQYIKERLDWLEENYRAVCKVDGLGYYDAFKLQKDPKDFQANIKRLEQAGIWDEIVEMLKRYELPEEFEGDDEWIKLGTRFRRLIEPLDIANYYRHSKNDDTGPYLVKGRPKRYRFTQRWLEHNQKMTEPSEESTLWARVEELRIQTKTKMYAEYSREIIELEKKMKRWVTEIEDDMLLKKSTFMEWWKTLPEHHRSQSCIRDDIERMATDDDAINTM 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29836743 29844611 - ClCG06G016640.2 Cla06g01631 275823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01631 858 SMART REC_2 33 174 IPR001789 GO:0000160
Cla06g01631 858 CDD REC_typeA_ARR 35 173 - -
Cla06g01631 858 Pfam Response regulator receiver domain 35 170 IPR001789 GO:0000160
Cla06g01631 858 PANTHER PROTEIN EDS1-RELATED 254 845 - -
Cla06g01631 858 Gene3D alpha/beta hydrolase 276 576 IPR029058 -
Cla06g01631 858 Pfam Lipase (class 3) 298 443 IPR002921 GO:0006629
Cla06g01631 858 Pfam Enhanced disease susceptibility 1 protein EP domain 653 842 IPR041266 -
Cla06g01631 858 Gene3D - 32 207 - -
Cla06g01631 858 MobiDBLite consensus disorder prediction 229 258 - -
Cla06g01631 858 ProSiteProfiles Response regulatory domain profile. 34 178 IPR001789 GO:0000160
Cla06g01631 858 CDD Lipase_3 288 453 - -
Cla06g01631 858 SUPERFAMILY alpha/beta-Hydrolases 288 450 IPR029058 -
Cla06g01631 858 SUPERFAMILY CheY-like 32 173 IPR011006 -
Cla06g01631 858 Coils Coil 785 812 - -
Cla06g01631 858 PANTHER PROTEIN EDS1-RELATED 254 845 IPR044214 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01631 K18875 EDS1; enhanced disease susceptibility 1 protein - csv:101214385 1006.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01631 Cla-Chr6:29836743 Cla10g01386 Cla-Chr10:28962334 6.09E-10 dispersed
Cla10g01384 Cla-Chr10:28951968 Cla06g01631 Cla-Chr6:29836743 1.03E-09 dispersed
Cla01g00731 Cla-Chr1:8525172 Cla06g01631 Cla-Chr6:29836743 4.88E-44 transposed
Cla04g00211 Cla-Chr4:6815917 Cla06g01631 Cla-Chr6:29836743 2.39E-48 transposed
Cla04g00444 Cla-Chr4:16664904 Cla06g01631 Cla-Chr6:29836743 1.89E-46 transposed
Cla07g00490 Cla-Chr7:6980106 Cla06g01631 Cla-Chr6:29836743 2.65E-44 transposed
Cla08g00600 Cla-Chr8:17908808 Cla06g01631 Cla-Chr6:29836743 7.34E-38 transposed
Cla09g00782 Cla-Chr9:7904575 Cla06g01631 Cla-Chr6:29836743 1.69E-08 transposed
Cla10g01535 Cla-Chr10:30671838 Cla06g01631 Cla-Chr6:29836743 3.00E-45 transposed
Cla05g02508 Cla-Chr5:36447145 Cla06g01631 Cla-Chr6:29836743 1.22E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01708 . 331 535 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cla06g00448 CCT,ECH 110 365 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cla05g00679 CCT,ECH 16 271 Response Regulator Gene Family AT4G31920 54.1 1.0e-69 261.5
Cla08g01708 . 290 538 Response Regulator Gene Family AT4G31920 50.4 4.6e-62 236.1
Cla05g01695 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.5e-42 170.2
Cla05g00679 CCT,ECH 99 286 Response Regulator Gene Family AT1G67710 50.3 1.8e-40 164.1
Cla06g01213 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.4e-102 368.6
Cla11g00324 . 15 367 Response Regulator Gene Family AT2G25180 54.0 1.1e-82 304.7
Cla05g00679 CCT,ECH 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cla08g01708 . 290 535 Response Regulator Gene Family AT2G25180 55.6 9.4e-69 258.5
Cla06g00448 CCT,ECH 173 406 Response Regulator Gene Family AT2G01760 51.4 7.7e-54 208.0
Cla06g01213 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.5e-49 191.4
Cla08g01708 . 351 538 Response Regulator Gene Family AT2G01760 51.0 3.7e-48 189.1
Cla08g01708 . 288 537 Response Regulator Gene Family AT5G58080 50.6 6.9e-62 235.7
Cla06g00448 CCT,ECH 111 336 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cla05g00679 CCT,ECH 12 242 Response Regulator Gene Family AT4G16110 66.1 3.8e-79 293.1
Cla05g01695 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.1e-61 234.2
Cla08g01708 . 289 514 Response Regulator Gene Family AT4G16110 54.5 9.8e-59 225.3
Cla06g01213 . 17 249 Response Regulator Gene Family AT4G16110 53.8 9.2e-57 218.8
Cla11g00324 . 18 251 Response Regulator Gene Family AT4G16110 55.4 3.0e-52 203.8
Cla06g01631 . 16 193 Response Regulator Gene Family AT3G48100 63.1 1.4e-50 196.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.7e-41 164.5
Cla04g00444 CCT 10 156 Response Regulator Gene Family AT3G48100 57.1 2.2e-40 162.5
Cla07g00490 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.5e-37 150.6
Cla06g01631 . 32 193 Response Regulator Gene Family AT1G59940 59.9 2.5e-44 176.4
Cla01g00731 . 5 152 Response Regulator Gene Family AT1G59940 58.8 1.7e-40 163.7
Cla04g00444 CCT 11 154 Response Regulator Gene Family AT1G59940 56.3 9.4e-39 157.9
Cla07g00490 . 18 153 Response Regulator Gene Family AT1G59940 60.3 4.6e-38 155.6
Cla10g01535 CCT 8 162 Response Regulator Gene Family AT1G59940 53.5 5.1e-37 152.1
Cla06g01631 . 32 193 Response Regulator Gene Family AT1G10470 61.1 1.6e-43 173.3
Cla01g00731 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.1e-39 160.6
Cla04g00444 CCT 17 168 Response Regulator Gene Family AT1G10470 56.9 1.2e-38 157.1
Cla10g01535 CCT 10 170 Response Regulator Gene Family AT1G10470 53.4 7.9e-38 154.5
Cla07g00490 . 23 153 Response Regulator Gene Family AT1G10470 61.1 1.8e-37 153.3
Cla06g01631 . 16 193 Response Regulator Gene Family AT3G48100 63.1 1.4e-50 196.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.7e-41 164.5
Cla04g00444 CCT 10 156 Response Regulator Gene Family AT3G48100 57.1 2.2e-40 162.5
Cla07g00490 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.5e-37 150.6
Cla06g01631 . 28 182 Response Regulator Gene Family AT5G62920 67.1 1.4e-47 186.4
Cla01g00731 . 11 151 Response Regulator Gene Family AT5G62920 61.0 1.7e-40 162.9
Cla04g00444 CCT 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cla10g01535 CCT 10 164 Response Regulator Gene Family AT5G62920 52.9 5.1e-37 151.4
Cla06g01631 . 29 198 Response Regulator Gene Family AT1G19050 64.7 6.4e-49 191.0
Cla04g00444 CCT 11 156 Response Regulator Gene Family AT1G19050 54.8 3.0e-38 155.6
Cla01g00731 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cla07g00490 . 23 154 Response Regulator Gene Family AT1G19050 60.6 1.9e-37 152.9
Cla04g00444 CCT 8 264 Response Regulator Gene Family AT2G41310 54.1 1.1e-59 226.9
Cla10g01535 CCT 1 165 Response Regulator Gene Family AT2G41310 68.5 4.7e-53 204.9
Cla01g00731 . 1 153 Response Regulator Gene Family AT2G41310 64.3 9.1e-49 190.7
Cla08g00600 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.7e-43 170.6
Cla07g00490 . 17 154 Response Regulator Gene Family AT2G41310 55.6 5.9e-40 161.4
Cla06g01631 . 31 178 Response Regulator Gene Family AT2G41310 55.5 4.2e-38 155.2
Cla04g00444 CCT 8 264 Response Regulator Gene Family AT3G57040 53.1 3.0e-63 238.8
Cla10g01535 CCT 1 165 Response Regulator Gene Family AT3G57040 70.9 2.6e-54 209.1
Cla01g00731 . 8 153 Response Regulator Gene Family AT3G57040 67.1 3.8e-50 195.3
Cla08g00600 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.0e-43 172.9
Cla07g00490 . 20 154 Response Regulator Gene Family AT3G57040 56.7 4.0e-39 158.7
Cla06g01631 . 28 187 Response Regulator Gene Family AT3G57040 52.7 2.6e-38 156.0
Cla06g01631 . 26 198 Response Regulator Gene Family AT1G74890 64.4 7.5e-50 194.1
Cla04g00444 CCT 12 172 Response Regulator Gene Family AT1G74890 52.1 2.7e-39 159.1
Cla01g00731 . 11 146 Response Regulator Gene Family AT1G74890 60.3 6.0e-39 157.9
Cla07g00490 . 23 150 Response Regulator Gene Family AT1G74890 60.2 5.6e-37 151.4
Cla07g00490 . 23 155 Response Regulator Gene Family AT2G40670 70.1 2.1e-47 185.7
Cla10g01535 CCT 6 164 Response Regulator Gene Family AT2G40670 52.8 1.6e-39 159.5
Cla06g01631 . 32 179 Response Regulator Gene Family AT2G40670 54.7 3.4e-37 151.8
Cla04g00444 CCT 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 150.6
Cla07g00490 . 5 155 Response Regulator Gene Family AT3G56380 66.4 6.9e-48 187.2
Cla06g01631 . 18 179 Response Regulator Gene Family AT3G56380 53.1 5.9e-39 157.5
Cla10g01535 CCT 6 164 Response Regulator Gene Family AT3G56380 50.9 2.2e-38 155.6
Cla01g00731 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.9e-37 152.5
Cla08g01708 . 331 535 Response Regulator Gene Family AT3G16857 53.8 2.3e-54 210.7
Cla06g00448 CCT,ECH 111 336 Response Regulator Gene Family AT4G16110 66.7 2.2e-79 293.9
Cla05g00679 CCT,ECH 12 242 Response Regulator Gene Family AT4G16110 66.1 3.8e-79 293.1
Cla05g01695 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.1e-61 234.2
Cla08g01708 . 289 514 Response Regulator Gene Family AT4G16110 54.5 9.8e-59 225.3
Cla06g01213 . 17 249 Response Regulator Gene Family AT4G16110 53.8 9.2e-57 218.8
Cla11g00324 . 18 251 Response Regulator Gene Family AT4G16110 55.4 3.0e-52 203.8
Cla06g00448 CCT,ECH 110 365 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cla05g00679 CCT,ECH 16 271 Response Regulator Gene Family AT4G31920 54.1 1.0e-69 261.5
Cla08g01708 . 290 538 Response Regulator Gene Family AT4G31920 50.4 4.6e-62 236.1
Cla05g01695 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.5e-42 170.2
Cla05g00679 CCT,ECH 99 286 Response Regulator Gene Family AT1G67710 50.3 1.8e-40 164.1
Cla06g01213 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.4e-102 368.6
Cla11g00324 . 15 367 Response Regulator Gene Family AT2G25180 54.0 1.1e-82 304.7
Cla05g00679 CCT,ECH 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cla08g01708 . 290 535 Response Regulator Gene Family AT2G25180 55.6 9.4e-69 258.5
Cla06g00448 CCT,ECH 173 406 Response Regulator Gene Family AT2G01760 51.4 7.7e-54 208.0
Cla06g01213 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.5e-49 191.4
Cla08g01708 . 351 538 Response Regulator Gene Family AT2G01760 51.0 3.7e-48 189.1
Cla08g01708 . 288 537 Response Regulator Gene Family AT5G58080 50.6 6.9e-62 235.7
Cla04g01184 . 567 1114 Response Regulator Gene Family AT5G61380 50.8 2.5e-141 499.6
Cla04g00859 . 38 205 Response Regulator Gene Family AT5G60100 68.0 5.9e-54 208.8
Cla01g00008 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.2e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004701 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 6 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61336 PF18117 EDS1_EP 2.60E-52 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g01631 Cla_Chr06 FPKM 15.879391 17.622503 15.706822 17.989151 11.348787 10.780661 13.192511 16.818844 15.432893 17.354792