Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g01632 ATGGCGGCCAATCTTCATCTACCAGTTCCAGATTCTTCTTCAAACGCTTATTGCCGCAAGCAGAAGTCCCTCGGCCTCCTCTGCTCCAATTTTTTGAGATTGTACGATCGAGATGATGTTCAGTCGATCAGCCTCGATAATGCTGCCTCTCGCCTTGGTGTTGAAAGACGAAGGATCTACGATATTGTTAACGTTTTAGAAAGCGTTGGTATTCTGTGTAGAAAAGCAAAGAATCAATATAGTTGGATAGGATTTTCCGGCATTCCTAAGGCATTAAGACACCTAAAGGAAGAAGATTCGAAGGGAAATAGCTCTGCCATGTATGCCAATGACCACTCAAGATTGATAGATGACGAAGATGAAACATGTTCAGATCTCACATCTGTGAGCCATGAGTACTCTATGTTGTCTAAATCTTCAGCGTCAGTGAGATGTGTGGCATCAGAAAATCGGAAGGAAAAATCTCTTGCACTTCTAACGCAGAATTTTGTCAAGCTCTTTGTTTGCTCTAACGCACATGTGATTTCACTTGATGAAGCTGCAAAGTTACTGCTAGGCGATGCACAAAGTGTATCGATAATGAGAAGCAAAATCAGACGCCTTTACGATATTGCTAACGTGTTAGCTGCAATTCGTCTTATTGAAAAGACGCAAACCGTTGATACCAGAAAGCCTGCATTCAGGTGGCTAGGATTGAGAGGTAGAGTTGAGAATTGTCGGGCAGGCAAGCCGATGGAATCAAATAAAAGGAGTTTTGGAACCGACATAACAAACATCAACTCGAAGAGAAACAGATTGGCAAATTCATTTGACCTGAATAAGAGCCCCAATTCCCAGAAACAAAACCATGTGCAGCTTGAGGGTTGTAGGGTTGAAGTAGATGGGGGCGAATTAGAGCATGATCCAAATTCTAAGAGCTTCAAATTTGGACCCTTTTCTCCCAGTGCTAGACTGGAAGTTAGAGCATTGAAAAATGAAGCGAAACGGAGTCGTAATAACTGGGTGAGCCTCGCCGCAACTTACCATCCTCAGTATCAGAACCAAGCTTTAAGAGAATTATTCTCCCATTACAAGGAAGCCTGGAAGTTATGGTACGTTCAAACTGTGAACAGACCATCAATACAAATCCCTGAAGCATAA 1140 42.54 MAANLHLPVPDSSSNAYCRKQKSLGLLCSNFLRLYDRDDVQSISLDNAASRLGVERRRIYDIVNVLESVGILCRKAKNQYSWIGFSGIPKALRHLKEEDSKGNSSAMYANDHSRLIDDEDETCSDLTSVSHEYSMLSKSSASVRCVASENRKEKSLALLTQNFVKLFVCSNAHVISLDEAAKLLLGDAQSVSIMRSKIRRLYDIANVLAAIRLIEKTQTVDTRKPAFRWLGLRGRVENCRAGKPMESNKRSFGTDITNINSKRNRLANSFDLNKSPNSQKQNHVQLEGCRVEVDGGELEHDPNSKSFKFGPFSPSARLEVRALKNEAKRSRNNWVSLAATYHPQYQNQALRELFSHYKEAWKLWYVQTVNRPSIQIPEA 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29848864 29850948 + ClCG06G016660.1 Cla06g01632 275824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g01632 379 SUPERFAMILY Winged helix DNA-binding domain 153 232 IPR036390 -
Cla06g01632 379 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Cla06g01632 379 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Cla06g01632 379 PANTHER TRANSCRIPTION FACTOR E2F 11 365 IPR015633 GO:0000978|GO:0006357
Cla06g01632 379 Pfam E2F/DP family winged-helix DNA-binding domain 152 231 IPR003316 GO:0005667|GO:0006355
Cla06g01632 379 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Cla06g01632 379 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 11 365 - -
Cla06g01632 379 SUPERFAMILY Winged helix DNA-binding domain 19 83 IPR036390 -
Cla06g01632 379 Gene3D - 146 233 IPR036388 -
Cla06g01632 379 Gene3D - 14 86 IPR036388 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01399 Cla06g01632 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01021 Cla-Chr4:25311946 Cla06g01632 Cla-Chr6:29848864 3.38E-11 dispersed
Cla06g01632 Cla-Chr6:29848864 Cla08g01431 Cla-Chr8:27149914 2.66E-09 dispersed
Cla01g01399 Cla-Chr1:28423998 Cla06g01632 Cla-Chr6:29848864 1.39E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61337 PF02319 E2F_TDP 2.10E-19 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g01632 K09391 - csv:101210753 580.096